Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0831 ATGGGTTCTGATATTTGCGTCGTTAATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCTTGAGCCATTATCCACATACGAGAATTCAGTTTTCTGCAGCAAATTCCACCACCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGCGGATGCATGGTATCTAGATCTTTGTTCGAGCATCTTGACTATGGTGGTATAGGATGTGTTAGCTGTGTAAATACTAGCCAACTTAGTACGATGAGGAATATTGAAAATCCAAATGGGCCTGTTTCATTGATAAAAAATAATGCAAGTGACCGGCCTTCTTCTCATTCTGAGGGAAGACTGTTTGCACGTGGTGTTGATGAAGGAAAACTTATGCAATTCTGCAAAATTATTGAAGCTAGTGAATCCAGCCGATGGAATAATGCTCAAAGAGATGGCATCATTTCACGTCATGGGCACAACAACCAAGAAGCCAAGTGTTCATTTGGGGAAGGAGACATTGGTTTTTCAAATGTGATGAAGCCATCTGTTCAGTCATTAACATTTGCTACACTAGAAAATAATAGGTCACCATGGGAGATTAAAAACATCCATGAAGCGAATGTGCAGCCATCATTGAGTATGTACCTGGGAAATGCATCAGGGAACAACTCTGTCCTGCCCTCTGCTGGAGAGGCAGTGGAAGGAAGACTAGAGGGAAAACCATCTCCTCCCTTTCATCAAGGGCAAAGGTCTCGCCCTATATTTCCCAAACCGTTGAAGAGTGGACTTACCATGAATGTGGAAATAGATAAAGGTACAATTTCTCAATCACGTGTTGCTCGGCCACCTGCAGATGGCAGAGGAAAAAATCAGTTACTTCCTCGATACTGGCCGAGGATTACTGATCAAGAGTTGGAGCGACTGTCTGGAGATTTGAAATCCACCGTTGTGCCATTATTTGAGAAGGTATTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTTCCAAAAGCCTGCGCTGAGGCATATTTCCCTTCTATTTCACAATCTGAGGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAATAGTAGAATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGGCGATGCAATTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGAGGCAAACTTGTAATGGGTTTCAGAAGGGCATCAAATTCTGCAGATACACAGGATACCTCCACATCTGCACAATCTAATTCAGCAAAGGGAACCACCTCTGCTGGAACTGAGAATCTGCCATCAGGAAGTAGTCATGCCAATCTTCTCCTTTCAATGAAGGGGGGGAATGTGGAACCTCACTTAAATGGACAAAGAGAACATCTACATTTGGGTACTGGAACTTCCGAGTTGCTTATAACTGAAAATAATGGGATGACAAACAATAGTTCAGTACAACAAAAATTTTTGTCTTTAGAGAAGAAGAAGACTCGTAATATAGGGCCTAAAAGTAAAAGGTTGCTTATTGACAATGAAGATGCTAGGGAGTTAAAACTTACATGGGAAGAAGCACAGGATTTACTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATACGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTACTTGTTCTTCTGGCGTGAAGGAACAATGGGCTCAATGTGATGATTGTTCTAAATGGCGAAAGGTTCCAATTGATGCTCTTCTTCCTGCCAATTGGACATGTTTTGACAATGCTTGGGATTCAATAAGATGTTCATGCACTGTACCTGAAGAGCTAAGTTCAGGGGAATTAGAAAATCTTTTGAAAACCGACAAAGATTTTAAGAAGCGACGAAGTGATGAAAAGAGCAAGTCAATCCAAGAACACGAGGCATCTGGCTTGGAAGCTCTTGCCTGTGCAGCAGCCCTGGGAGAAAATCTTGTTGACACTGCCGAATCATCAGCTGGAGCCACCACCAAGCATCCTAGACACCGCCCTGGCTGCTCTTGCATTGTGTGCATCCAGCCCCCAAGTGGCAAGGGGAGACACAAGCCGACATGCACATGCAACGTCTGCTTGACCGTGAAGCGCCGGTTCAAAACCCTCATGCTTCGAAAGAAAAAACGGCAATCTGAACGCGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTCCAGAAAGAGGAGTCAGATACCAATGAGACATCAAGAGATGACGCAACTCAGTTGGAGAAAGAGGTAGTAGGACTAAGCAGAAGTCAAGCTGAAGGGGGTGAGTCCAGTGCTGCTGGACAAATTGATCTGAATTCTCATCCCAACCGTGAAGACATGCAAGTGGATATCACTGGAGTTATGTTTTGCGAAACAGACCCTTCTACAGTACGGGAATATATGAACCAAAATGGTCCAAGAAGCTATAACAATGAATTGCAGAATGGTGAAAATTCTTCTTTGCACACTTCTCAATCCAATGTTGAAGGTCAGAGACACTTCTCTGATCTAAGAAGCTTTGCATCCATTATGTGGAACCAAGAAAGAAGAGATGAGGAAGACAGTGAACCCAACCAAAGCCAAAACAATCTTTGTTAA 2736 0.4386 MGSDICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGFMEEWKGDILEPLSTYENSVFCSKFHHQQTGWRECNFCNKPIHCGCMVSRSLFEHLDYGGIGCVSCVNTSQLSTMRNIENPNGPVSLIKNNASDRPSSHSEGRLFARGVDEGKLMQFCKIIEASESSRWNNAQRDGIISRHGHNNQEAKCSFGEGDIGFSNVMKPSVQSLTFATLENNRSPWEIKNIHEANVQPSLSMYLGNASGNNSVLPSAGEAVEGRLEGKPSPPFHQGQRSRPIFPKPLKSGLTMNVEIDKGTISQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLRAGDTVTFSRIDPGGKLVMGFRRASNSADTQDTSTSAQSNSAKGTTSAGTENLPSGSSHANLLLSMKGGNVEPHLNGQREHLHLGTGTSELLITENNGMTNNSSVQQKFLSLEKKKTRNIGPKSKRLLIDNEDARELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSTCSSGVKEQWAQCDDCSKWRKVPIDALLPANWTCFDNAWDSIRCSCTVPEELSSGELENLLKTDKDFKKRRSDEKSKSIQEHEASGLEALACAAALGENLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCLTVKRRFKTLMLRKKKRQSEREAEAAQKDQVLQKEESDTNETSRDDATQLEKEVVGLSRSQAEGGESSAAGQIDLNSHPNREDMQVDITGVMFCETDPSTVREYMNQNGPRSYNNELQNGENSSLHTSQSNVEGQRHFSDLRSFASIMWNQERRDEEDSEPNQSQNNLC* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0831 911 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 863 - -
Pvu6g0831 911 MobiDBLite consensus disorder prediction 439 475 - -
Pvu6g0831 911 Pfam B3 DNA binding domain 339 439 IPR003340 GO:0003677
Pvu6g0831 911 Pfam CW-type Zinc Finger 606 648 IPR011124 GO:0008270
Pvu6g0831 911 ProSiteProfiles Zinc finger CW-type profile. 601 651 IPR011124 GO:0008270
Pvu6g0831 911 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Pvu6g0831 911 MobiDBLite consensus disorder prediction 253 276 - -
Pvu6g0831 911 MobiDBLite consensus disorder prediction 757 794 - -
Pvu6g0831 911 Gene3D - 317 444 IPR015300 -
Pvu6g0831 911 MobiDBLite consensus disorder prediction 849 911 - -
Pvu6g0831 911 MobiDBLite consensus disorder prediction 849 879 - -
Pvu6g0831 911 Gene3D - 604 659 - -
Pvu6g0831 911 MobiDBLite consensus disorder prediction 438 475 - -
Pvu6g0831 911 SUPERFAMILY DNA-binding pseudobarrel domain 337 438 IPR015300 -
Pvu6g0831 911 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 863 - -
Pvu6g0831 911 MobiDBLite consensus disorder prediction 803 822 - -
Pvu6g0831 911 CDD B3_DNA 337 438 IPR003340 GO:0003677
Pvu6g0831 911 Coils Coil 758 778 - -
Pvu6g0831 911 MobiDBLite consensus disorder prediction 754 822 - -
Pvu6g0831 911 SMART B3_2 339 440 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0831 Pvu-Chr6 19807947 19815316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0831 1 828 B3 DNA Binding Superfamily AT2G30470 47.909 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu6g0831 B3 1.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0831 - - var:108341743 1707.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0831 6 19807947 19815316 Pvu6g0831 6 19807947 19815316 ECH
Pvu6g0831 6 19807947 19815316 Pvu8g2561 8 56229384 56235717 PCT