Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0817 ATGACCAGAAGAAAGGTGAAATTTGCATTCATAGAAAATGATTCTGCAAGGAAGACAACATACAAGAAAAGGAAAAAGGGAGTGCTGAAGAAGATTGAGGAACTCAGCACCCTTTGTGGCATTGATGCATGTGCTATAGTTTATGGTCCTGATGATCATGAGGCAGAGGTTTGGCCATCCCATTGTGGGGTCCAAAGGGTGGTGGAAAGGTTCAGGAATATGCCTGCAGTTGAGAAAATCAAGAAGATGGTGAACCAAGAGAGCTTCATAGGACAAAGGATCCAAAAGGGTAACGAGCAAATGATGAAACTTATGAAGGACAATGCGGAGAAGGAGTTGACCTTGTTCATGTTTCAGTGCCTTACTGAAGGGAGGGTTTTGCCAGATGAAAATAACATGACCTTTGCTGATTTGAATGTCCTTTCATCAGTGATTGAACAGAACTTGAAAGACATTGGTAAAAGGTTGCAAACTCTGAATGTTAATAAGATACAACCAAATCAACAACCCCAGATGCAAACATCAGTGTTCCAACCACAGTTGAAAACAGCATCATACCAACCTCATTTGCAAATGACACTGATGAGTTCTGGACATGGGTTGGATATGGATGTTAACCCCATGCAAAGGTTGTTGTTTATGGACTTGCTTAATGGTGATAGAGATGAGACAATAATGCCTCCTTTTGGTGATCCTAATCTCCAGTTTTGGCCAAACCTAGGCTTGTTGCCTTGA 735 0.415 MTRRKVKFAFIENDSARKTTYKKRKKGVLKKIEELSTLCGIDACAIVYGPDDHEAEVWPSHCGVQRVVERFRNMPAVEKIKKMVNQESFIGQRIQKGNEQMMKLMKDNAEKELTLFMFQCLTEGRVLPDENNMTFADLNVLSSVIEQNLKDIGKRLQTLNVNKIQPNQQPQMQTSVFQPQLKTASYQPHLQMTLMSSGHGLDMDVNPMQRLLFMDLLNGDRDETIMPPFGDPNLQFWPNLGLLP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0817 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 192 - -
Pvu6g0817 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu6g0817 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu6g0817 244 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pvu6g0817 244 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Pvu6g0817 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu6g0817 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 - -
Pvu6g0817 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Pvu6g0817 244 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0817 Pvu-Chr6 19673572 19674306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0817 1 159 Type I MADS-box Gene Family AT5G48670 53.459 1.72e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu6g0817 SRF-TF 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0817 - - vra:106752453 381.719