Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0816 ATGTCTCGTAGAAAGGTGCAACTCACATTCATAGCCAATAATTCAGACAGGAAGGCATCATTCATCAAAAGGAAGAAGTCATTGCTGAAGAAGACGGAGGAAATCAGCACCCTTTGTGGTGTTGAAGCATGCACAATAGTTTATGGCCCTTATGGTCCTGAGCCAGATGTTTGGATATCCAAATCGGGTGTTCAAAATGTGGTGGAAAGGTTCAGGAATACATGTGAGCACAACAAGAAGATGGCGACCCAAGAGAGTTTCCTTTCAGAAAGAATCGCCAAGGGTAGAGAGAAGATGAAGAAACATGTCAGGAGCAACCAAGAGAAGGAGATGAACATGTTCATGTTTCAGTGCCTTAAGAATGGGAGGGTTGAGCTTCACAATAACATGACCACAGATGATTTGAATGCTCTTTCATCAGTGATTGAAAACAAGCTGAGGGACATTAATAAAAGGATGGAAACTGTGAATGTTACTGAGATGCCACCAAATCAACCCCAGATGGAACTAGCAGCAGTAGCAGTAGCAGCAGCACCTGAAGACATCACACCACCAAATCATGGCGATGGGACATATATGAATGCTAATGACCCCTTGCAAAGCCAGTGGTTTATGGAGTTGCTTAATGATGATGGTGATGATGAGACAATAAAGCCTTCATTTGGAGATCCTAATCTCCCACCACTCTAA 690 0.4304 MSRRKVQLTFIANNSDRKASFIKRKKSLLKKTEEISTLCGVEACTIVYGPYGPEPDVWISKSGVQNVVERFRNTCEHNKKMATQESFLSERIAKGREKMKKHVRSNQEKEMNMFMFQCLKNGRVELHNNMTTDDLNALSSVIENKLRDINKRMETVNVTEMPPNQPQMELAAVAVAAAPEDITPPNHGDGTYMNANDPLQSQWFMELLNDDGDDETIKPSFGDPNLPPL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0816 229 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 186 - -
Pvu6g0816 229 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Pvu6g0816 229 MobiDBLite consensus disorder prediction 210 229 - -
Pvu6g0816 229 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Pvu6g0816 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 - -
Pvu6g0816 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Pvu6g0816 229 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Pvu6g0816 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu6g0816 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu6g0816 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu6g0816 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu6g0816 229 CDD MADS_SRF_like 3 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0816 Pvu-Chr6 19669416 19670105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0816 1 186 Type I MADS-box Gene Family AT5G48670 46.316 5.81e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu6g0816 SRF-TF 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0816 - - vun:114188526 392.889