Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0815 ATGACAGGGAGAAAGGTGAAACTGGCATTCATAGCCAATGATTGTGCCAGGAGGGCATCGTATAGAAGGAGGAAGAAGTCAATGTTGAAGAAGATTAAAGAACTGAGCACCCTTTGTGGAGTAGAAGCATGTGCCATAGTGTATAGCCCCTTTGATCAAGAGCCACAGATTTGGCCATCTGAATCAGGTGTTCAAGATGTGGTTGAAAAGTTCAGGACCATGCCTGAATGGAAGAAGCACAAGATGGGGAATCAGGAGAGTGTCATGGAAAAAAGTATAGTGAAGGGTAAAAGGAAGATTAGGAAACTTGAGGAGGAGAATAAGGAAATGGAGATTACCATGTTCATGTTTCAATGCCTTAATTCGAGTAGGGTTCAGCCTCAACATCATATGACCTTGGCAGATTTGAATCTTCTTTCATCAGTGATTGAACAGAAATTGAACGACATTAGTAGAATGTTGGAAATTACAAATGTTACTGAGGCACCATACCAACCCCAGATACAACCATTTGTAGATACTAATCTTAAACTCTAA 537 0.406 MTGRKVKLAFIANDCARRASYRRRKKSMLKKIKELSTLCGVEACAIVYSPFDQEPQIWPSESGVQDVVEKFRTMPEWKKHKMGNQESVMEKSIVKGKRKIRKLEEENKEMEITMFMFQCLNSSRVQPQHHMTLADLNLLSSVIEQKLNDISRMLEITNVTEAPYQPQIQPFVDTNLKL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0815 178 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pvu6g0815 178 Coils Coil 93 113 - -
Pvu6g0815 178 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
Pvu6g0815 178 CDD MADS_SRF_like 2 76 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pvu6g0815 178 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 166 - -
Pvu6g0815 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Pvu6g0815 178 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 166 - -
Pvu6g0815 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu6g0815 178 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0815 Pvu-Chr6 19660321 19660857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0815 1 156 Type I MADS-box Gene Family AT5G48670 48.408 4.02e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu6g0815 SRF-TF 8.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0815 - - pvu:PHAVU_006G077900g 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0815 6 19660321 19660857 Pvu6g0815 6 19660321 19660857 ECH