Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0814 ATGACTAGAGCCAAGATTGAACTTGCTTACATAACCGATCCTGGGAAGAGGAAGGCAACCTTCAAGAAAAGAAAGAATGGTTTGATGAAAAAGATCAGTGAAATCACTGTCCTATGTGGGATTGATGCATGTGCTGTAGTTTATAGTCCTGATGTGCCTAATAAGCCAGAGTTTTGGCCATCTGAATCTGGAGCCAGGAGTGTGATTTCCAAGTTCAATGGTGTGTCAGAGTCTGAGAAAACTAAGAAAATGTTCTGCCAAGAGAGCTTTATAAGGCAGAGAATTGACAAAAGCCAAGAACAGCTGAAGAAACTAAAGAATGAAAATAGGAAGAGAGAGATTAGCCTTCTTATGTGTGAATACCTCACTCATGGGAGCAACAACCTTGACAGCAACAACATCAATTATCTGAAAGATTTCTCCTTTTTCACTGATCAAAACTTAGATGAAATTAGAAACAAAGTCACTGTGCATCCAGCACAAGAGGAGACACCAGTGATTTACAGTAGAGGAGAGCAAGCACAGGCTCAAGGGCATGGGACCAACTTTTCCAGGAAAAGAAAGCTGAATTAG 573 0.4066 MTRAKIELAYITDPGKRKATFKKRKNGLMKKISEITVLCGIDACAVVYSPDVPNKPEFWPSESGARSVISKFNGVSESEKTKKMFCQESFIRQRIDKSQEQLKKLKNENRKREISLLMCEYLTHGSNNLDSNNINYLKDFSFFTDQNLDEIRNKVTVHPAQEETPVIYSRGEQAQAQGHGTNFSRKRKLN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0814 190 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pvu6g0814 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pvu6g0814 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu6g0814 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu6g0814 190 MobiDBLite consensus disorder prediction 171 190 - -
Pvu6g0814 190 Coils Coil 88 115 - -
Pvu6g0814 190 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 164 - -
Pvu6g0814 190 PANTHER MADS BOX PROTEIN 2 164 - -
Pvu6g0814 190 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pvu6g0814 190 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pvu6g0814 190 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pvu6g0814 190 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0814 Pvu-Chr6 19638820 19639667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0814 5 157 Type I MADS-box Gene Family AT1G65300 43.871 1.49e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu6g0814 SRF-TF 7.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0814 - - var:108342715 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0814 6 19638820 19639667 Pvu6g0814 6 19638820 19639667 ECH