Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0813 ATGGCTAGAAAGAAGGTTGATCTTACTTTCATAACCAAAACCTCAAAGAGGAAGGCAACCTTCAAGAAAAGGAAAAATGGTTTGATAAAAAAGATTGGTGAAATCAGCATCCTTTGTGGGATTCAAGCATGTGCTATAATCTATTCCCCGGATGAGCCTGATCAGCCAGAGGTTTGGCCATCTGAGGAGGGAGTTGAGAGTGCTATTTCCAGGTTCAGGAGTGTGTCTGAACTGGAGCAAAGCAAGAAAATGTTCTGTCAGGAAAGCTTCTTGAGGCAAAGAATTGTGAAAGTCCAAGAACAGCTGAAGAAAGTGAGGAATGAGAATAGGAAGAAAGAGATTGGCCATCTGATTTCTCAATACATCACTGTTGGGAACAATCTGGAGAGTGCCAACATCATTGACCTCAATGATATCTCATTCTTGGCTGATCAATGCTTGGAGGACATCACAAAGAAAATCAGTGCTCGCAAAGCCCAAATGGTGACACCAGTTGCTGAAAATGGAGGACAAACTATGACTCATGGAGGACAAACGGTGACTCATGGAGAACAAGCACAAGTGAATCATGTCCAAGGGCCTTACACCGATGTTGATGCCATGCAAAACATGAATTGGTCTTCTGATATCATCAATGCTGGTGCTGCCAATGATATGTTAGCATTGGAAGATGTTAATGTCCAAAGTGGTTGGCTTAACCAATATATCCCTTGA 714 0.423 MARKKVDLTFITKTSKRKATFKKRKNGLIKKIGEISILCGIQACAIIYSPDEPDQPEVWPSEEGVESAISRFRSVSELEQSKKMFCQESFLRQRIVKVQEQLKKVRNENRKKEIGHLISQYITVGNNLESANIIDLNDISFLADQCLEDITKKISARKAQMVTPVAENGGQTMTHGGQTVTHGEQAQVNHVQGPYTDVDAMQNMNWSSDIINAGAANDMLALEDVNVQSGWLNQYIP* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0813 237 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pvu6g0813 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 - -
Pvu6g0813 237 Coils Coil 88 115 - -
Pvu6g0813 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu6g0813 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu6g0813 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pvu6g0813 237 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pvu6g0813 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 202 - -
Pvu6g0813 237 Gene3D - 14 121 IPR036879 GO:0003677|GO:0046983
Pvu6g0813 237 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Pvu6g0813 237 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0813 Pvu-Chr6 19630790 19631790 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0813 1 154 Type I MADS-box Gene Family AT5G48670 48.701 4.41e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu6g0813 SRF-TF 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0813 - - vra:106752448 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0813 6 19630790 19631790 Pvu6g0813 6 19630790 19631790 ECH