Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0809 ATGGCAAGAAAGAAGTTGGATCTCACATACATTACCAATGACTCAAAGAGGAAGACAACGTTAAAGAAAAGAAAACATGGTTTGATCAAGAAAATGAATGAAATTAGCACTCTTTGTGGGATTGAATCATGTGCCATAATTTATTCTCCAAATGATCCCCAGCCAGAGGTTTGGCCATCTGAGTCAGAAGTTCAAAGGGTGCTTTCCAAGTTCATGGAAATGTCTGAGCAGAAACAAAGCAGAAAGATGTTGAATCAGGAGAGCTTGTTGAAACAAATAATCATCAAAAGCCAACAACAGTTGACAAGACAGAGGAATGAGAACAGGAAAAAAGAAATGACTCATCTAATGTTTCAGTACTTGAGTATTGGGAAGGTTTTTGACAATCCTAGTTTAATAGATTTGAATGATTTGTCATGGCTGATTGATCAGAACCTGAATGAAATAAAAAAGAAGATGACTATGATCCAAATCCAAGAAGTATCTTCGGTGACTGAAAATGGAGGAGAACATGGATTCATGCATCATGTTCAAGGGCGGGAAAGCAAGATAGACACATTAAGAAGCAATATTGATCCATGA 582 0.3694 MARKKLDLTYITNDSKRKTTLKKRKHGLIKKMNEISTLCGIESCAIIYSPNDPQPEVWPSESEVQRVLSKFMEMSEQKQSRKMLNQESLLKQIIIKSQQQLTRQRNENRKKEMTHLMFQYLSIGKVFDNPSLIDLNDLSWLIDQNLNEIKKKMTMIQIQEVSSVTENGGEHGFMHHVQGRESKIDTLRSNIDP* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0809 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Pvu6g0809 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu6g0809 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu6g0809 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu6g0809 193 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Pvu6g0809 193 PANTHER MADS BOX PROTEIN 2 162 - -
Pvu6g0809 193 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pvu6g0809 193 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 162 - -
Pvu6g0809 193 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Pvu6g0809 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu6g0809 193 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0809 Pvu-Chr6 19609299 19610107 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0809 1 170 Type I MADS-box Gene Family AT5G48670 49.143 1.07e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu6g0809 SRF-TF 3.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0809 - - gmx:100797590 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0809 6 19609299 19610107 Pvu6g0809 6 19609299 19610107 ECH