Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0795 ATGGAGATATCATTGTTAAAAATGATAGTAAATGGCATATCCTCGTTTTTGCATTTATCAATTTCTGGAAACATGAGCTCTGAACCTGTCTCAAAGTATTACCAGAAGGCAGAGGAAATACTTAAGTTGTTGAAGCCAATCATTGATGAGATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAGTAAGATATTGGAAGAAATTGGTCTTGCCGTTAATGAATTAAAGGAGCATGTTGAGAACTGGCACCTATTGTCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGCATTCTCTCCCTGATGAATTGAGTTCCGAAGATTTACAGCAATGTTCACATAAACTTAAGCTGTTGGGACATGAAGAAAGCTCATCAGTTATTAAGGAAGCTATTGTACAACTGGAATATGCAGGACCCAGTCCAGATGTCCTGACAATAATTGCTGATAGACTGGGCCTAATGTCTAATCAGGATGTTCTTATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAATCTGAAAAGACCGAGGAGGCTGAATACATTGATCAAATGATTGCTGTCATAACACATATGCATGAGCGTCTCATTATGCTTAAGCAAGCTCAGAGTAGCAGCCCAGTTCCAATACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTAGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACAGTTTGTCCAAAGACTCGTCAAACTCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCTTTAATTGCAAATTGGTGTGAATCTAACAATGTGCGACTAGTTGATCCCACAAAATCCACAAATCTAAATCCACCATCCGTCCTTCATGGGTATATGGAATCTGGTACAACCAGGGAGTCACCTGTTTTTGCTCACCCCAGGAGCAACCAGCCATCCTCACCTGAGTCAGCACGTTCTCGCTCTTTTAGTTCACCAGGTAATAACATAACTTCTGGTGGGATTCAGCTAGAGGAAACATCATCACCTTTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGTATAATTAATGGGCAATATATGGATCTTGCAAGAATATCTCCTGCTGGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCACTGTGGATTCAGCTAGCCAACCATCATTGTCACCATCTAGAAGGGAATCATCCAGTGCCTTTGGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGACTCCAGTGCGCTTTCTACTGCAAACTTTCCTCAAGAAACCCAAGATGATGACAACAATGCTCCTCATCTGTCAACAAGTCCAGGCCACAGTAGAGATGCTTCTGGTGAACTAAATACAGGGCCAGAAACTGCTGGTACTACTGTCATGCTGTCAACACATAGAGAAGCTGAGTCCCCAGTCCGATTGTTTGAGACAAGGCCTCGAAGCCAAGCTATATGGAGGCGGCCATCAGAGAGGCTTGTTCCTAGGATAGCATCTCCTGCTATTGAAACAAAAGGTGATCTTTCAGGTATTGAAGCCCAGGTCCGGAATTTGGTTGAGGGCTTGAGGAGCTCTGATCTGGATGCTCAGAAAGAGGCAACAGCAGAACTCCGTCTTCTTGCAAAGCACAATATGGACAATCGAATTGCGATTGCTAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTAGATCAGCTGATACAGCGATCCAAGAAAATGCTGTTACCGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGAAATTGCAAGTGCTGGTGCAATAGAACCTCTGATTCACGTGCTTGAGCATGGGAGCCCAGAAGCCAAGGAGAATTCTGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTCCATAGGGAGGTCTGGGGCAATTAGACCGCTGGTAGATTTATTGGGGAATGGGACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTAGCCACAATTCTAGAAGGAAGAAATGCAATTGGTGAAGAAGGAGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTTCATCTTTGCTTACATAGTGATAGATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCTCCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGAGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAATCAAAGACATGGGAATGCTGGGAGGGGCTGA 2517 0.4323 MEISLLKMIVNGISSFLHLSISGNMSSEPVSKYYQKAEEILKLLKPIIDEIVNSELASDEVLSKILEEIGLAVNELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLNIFQQLKVSQHSLPDELSSEDLQQCSHKLKLLGHEESSSVIKEAIVQLEYAGPSPDVLTIIADRLGLMSNQDVLIEAVALERLKENAEQSEKTEEAEYIDQMIAVITHMHERLIMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVRLVDPTKSTNLNPPSVLHGYMESGTTRESPVFAHPRSNQPSSPESARSRSFSSPGNNITSGGIQLEETSSPLHPRSTSEGSLSGIINGQYMDLARISPAGLDDRSASSDESTVDSASQPSLSPSRRESSSAFGSEQSQTHIRAVSDSSALSTANFPQETQDDDNNAPHLSTSPGHSRDASGELNTGPETAGTTVMLSTHREAESPVRLFETRPRSQAIWRRPSERLVPRIASPAIETKGDLSGIEAQVRNLVEGLRSSDLDAQKEATAELRLLAKHNMDNRIAIANCGAINLLVDLLRSADTAIQENAVTALLNLSINDNNKTEIASAGAIEPLIHVLEHGSPEAKENSAATLFSLSVIEENKISIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATILEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLHLCLHSDRFLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRNQRHGNAGRG* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0795 838 SUPERFAMILY RING/U-box 226 311 - -
Pvu6g0795 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 677 719 IPR000225 GO:0005515
Pvu6g0795 838 MobiDBLite consensus disorder prediction 337 390 - -
Pvu6g0795 838 Pfam U-box domain 235 305 IPR003613 GO:0004842|GO:0016567
Pvu6g0795 838 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 834 - -
Pvu6g0795 838 MobiDBLite consensus disorder prediction 311 390 - -
Pvu6g0795 838 Coils Coil 178 205 - -
Pvu6g0795 838 Pfam Armadillo/beta-catenin-like repeat 586 623 IPR000225 GO:0005515
Pvu6g0795 838 Pfam Armadillo/beta-catenin-like repeat 668 705 IPR000225 GO:0005515
Pvu6g0795 838 Pfam Armadillo/beta-catenin-like repeat 625 664 IPR000225 GO:0005515
Pvu6g0795 838 PANTHER U BOX DOMAIN-CONTAINING 7 834 - -
Pvu6g0795 838 SMART Ubox_2 238 301 IPR003613 GO:0004842|GO:0016567
Pvu6g0795 838 ProSiteProfiles U-box domain profile. 234 308 IPR003613 GO:0004842|GO:0016567
Pvu6g0795 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 595 637 IPR000225 GO:0005515
Pvu6g0795 838 MobiDBLite consensus disorder prediction 411 497 - -
Pvu6g0795 838 CDD RING-Ubox_PUB 239 281 IPR045210 -
Pvu6g0795 838 Gene3D - 537 833 IPR011989 -
Pvu6g0795 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 312 IPR013083 -
Pvu6g0795 838 MobiDBLite consensus disorder prediction 407 497 - -
Pvu6g0795 838 SUPERFAMILY ARM repeat 555 827 IPR016024 -
Pvu6g0795 838 SMART arm_5 666 706 IPR000225 GO:0005515
Pvu6g0795 838 SMART arm_5 707 746 IPR000225 GO:0005515
Pvu6g0795 838 SMART arm_5 625 665 IPR000225 GO:0005515
Pvu6g0795 838 SMART arm_5 747 787 IPR000225 GO:0005515
Pvu6g0795 838 SMART arm_5 584 624 IPR000225 GO:0005515
Pvu6g0795 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 718 759 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0795 Pvu-Chr6 19501477 19511151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0795 195 838 U-box Gene Family AT2G23140 62.673 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0795 - - gmx:100811250 1367.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0795 6 19501477 19511151 Pvu8g2580 8 56410335 56417784 PCT