Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0728 ATGGTTTCTACTTGGGTAAGAGGCAAGTGCATAGGTAAGGGCGCGTTTGGCACCATCAGCGTCGCGCTTCGAAAGCTTGAGGCTCAAACGCAAATTTTCGCGGTGAAGTCCGTGGATATTAAAACGGGTCTTCCGGGTCAGCTCGAAGCGTTGGAGAACGAGATTCGGATCCTCCAACGCATGTCCTCGCCGCACGTGGTAACCTTTCTCGGTGAAGACACCACGTCCGAGAGGCGGAACCTTCACATGGAGTATATGCCAGGTGGCACTCTCGCTGACCTGGACGCCGACGTGGAAGAGTATTTGGTGAGACAATACACGTGGTGCTTGGTGAGTGCTCTGAAGCACGTGCACGCAAACGGCGTCGTTCACTGCGACGTGAAGGGGAAGAACGTCCTTATTGGAGACGGAGCCAGCGGCTGCAGCTGCAAGCTCGCCGACTTCGGATCGGCGATGGAGTTCGACGGTGAAGGTCTCCCGGCGGCTTCGCCGCGCGGGAGTCCGCTGTGGATGGCGCCGGAAGTGATACGGCGGGAGTGTCAGGGTCCGGCATCGGACGTTTGGTCGTTAGGTTGCACGGTGATCGAGATGCTCACCGGAAAGCCGCCGTGGGAGGGGAACGCCGTCGACGCGCTCAGTCGAATTGGCTTCTCCGGCGAGGTGCCGGGGTTTCCGCGCCGGTTATCGGAGCTCGGCCGGGATTTTCTGGAGAAGTGTTTGAGGTGGGAGCCGCGGCGGCGGTGGAGCTGCGATCAGCTGCTGGAGCATCCTTTTCTGTTACCGTGTGGTGTGATCGTGGAATCTTCGCCTCGGTGCGTTCTCGACCGAGTTGACTCGGAGTTCGCTGAGTTCGACGAAGAAGATGAGGAAGAAGAAGAAACAATGAGAATTGAAAACGAAAATTTGGCGAGGGATAGAATTGGAAATTTGGCGATGAGCGTAGGGGTAGACTGGGAAACGCAAGGATGGGTGATGGTGAGGGAATTGGCTTTCGATGCGGAACCGGTGGCGGGAGACAGTTCTGAGGACGTTAGAGAAGGGATAATTTTGGAAAGTTTTGAGTTTTCGAGGGTAGAACGGGGAATTCAGGTAGGGACAAATTCGGAATGTACAAGATTGGAAAAGAAAATGGAAAAAATTGGAATGTGGAGTTTGAGTGGGAGGGAAAATGTTGATAAGAAAAAAAGAATGATAATGAAAATGAAGATTTACAAGTTGTACTGTAAATTATTGAAATCACATTGTTTGTTTTTGAAGCATTTAATCATATATTTATGTTTTGGTGTTATTGGGTGGATTAATTTTGATGGTATTATGAGTAAAGTATATTTGTAA 1335 0.5139 MVSTWVRGKCIGKGAFGTISVALRKLEAQTQIFAVKSVDIKTGLPGQLEALENEIRILQRMSSPHVVTFLGEDTTSERRNLHMEYMPGGTLADLDADVEEYLVRQYTWCLVSALKHVHANGVVHCDVKGKNVLIGDGASGCSCKLADFGSAMEFDGEGLPAASPRGSPLWMAPEVIRRECQGPASDVWSLGCTVIEMLTGKPPWEGNAVDALSRIGFSGEVPGFPRRLSELGRDFLEKCLRWEPRRRWSCDQLLEHPFLLPCGVIVESSPRCVLDRVDSEFAEFDEEDEEEEETMRIENENLARDRIGNLAMSVGVDWETQGWVMVRELAFDAEPVAGDSSEDVREGIILESFEFSRVERGIQVGTNSECTRLEKKMEKIGMWSLSGRENVDKKKRMIMKMKIYKLYCKLLKSHCLFLKHLIIYLCFGVIGWINFDGIMSKVYL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0728 444 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 354 - -
Pvu6g0728 444 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 354 - -
Pvu6g0728 444 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0728 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Pvu6g0728 444 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Pvu6g0728 444 CDD STKc_MAPKKK 5 259 - -
Pvu6g0728 444 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0728 444 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0728 444 Gene3D Transferase(Phosphotransferase) domain 1 1 315 - -
Pvu6g0728 444 SUPERFAMILY Protein kinase-like (PK-like) 3 267 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0728 Pvu-Chr6 18894981 18896316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0728 5 334 MAP Kinase Kinase Kinase AT2G30040 57.692 6.85e-120 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pvu6g0728 Pkinase 1.4e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0728 - - gmx:100818366 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0728 6 18894981 18896316 Pvu6g0728 6 18894981 18896316 ECH
Pvu6g0728 6 18894981 18896316 Pvu8g2684 8 57235811 57237432 PCT