Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0723 ATGGTAATGGTGGATCTTGAAAATAATGGGAGCAGAAAACGCAAACGACAGATTCCAAGAAAGCTTGGAGTGGATACAAAAGTGGAGGTGAGGAGCATGGACATTGGGTTTCAAGGATCGTGGCACCCTGGGACAGTTATCCTATGTGAGGATTTGCAACGGCGTGTCAGATATAACAATATTTTGGATGACAAGGAGGCGTATTATCTTGAGGAGGTGGTGACAGTTTCAAAAGCTTTGGATGGTGATATTGAATGTGCAAACTGCTATGCACGCGGGTTCATTAGGCCATTGCCTCCTTTTGTTGAGTTTGATAGGGGGGACCTTGCATTTGGTTTGTGTGTTGATGTGAACTATGAGGAAGCTTGGTGGGAAGGAGTTATATTTGACCACTGTGAAGGAATGGACAAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATGCAGGTTGAAATTCACCACTTACGGATTACTCAGGACTGGGATGAAATTACCGAGGAGTGGACCCGACGAGAGAACTGGGTGTTTCTTGATTTGGTTGAGGAGCAGAAGAGCAACTTGTTTGTCACAGTTTCGGCCAAGCAGATTTGGTATGATATACGCATAAAAAAGGAATTTGAGGTGATTAGAGAGTGGACATGTAATTTGAAGTACTTGTGGACCGAGTTGATAAAGGAGGTAGTTAATCACTACTTATCTCTAACGGTAAAGGAAATTATCTCTGTCTTAAACCTTCCTAGGAGTTTATTAAATGAAACACCAGAGCAGGAATTTGCTGAAGCTATGCCCAATGTTGACTTGAGCATGATCTGGCATGATAAGGAAATTGTTGTGCAGAAAGAAATTGTCCCGCCCATTATTCAAGAGACCTTACCTGACTTTCAAGATGAAATTAGCCCCTCTGGTGATAGTCCTTTTGAAGAAGAAAGTAGAGAAAATAGATCCACTATTTGGAAACCTGTGAAGTTGTCTGGGGTTGAATTATGCCCTGATGCTGTTAGGGAATATCCGCTTGCTTCCAAACGTAAAGTCAGGGCATTTTGGATGGACAAGTTACAAAAGCATCTTGTATGTCTTGGATGGAAAATTGTGTGGTCAAATAGATTAAATGTTCAACGTTACAAGTATATTGCCCCTTATACGCACGGTCGAAGGTATTACCTTTCACTCATTGAAGTTTGTGAAGCTATGAAACAGGACCCTGACATGAAGTCCTTGCATCTCCAAAATGTTCGGAGTATAATGCATCCTACAGTTAATTGTCATCCTTCAGACGTGCCTTCTAATCTAGCTGAAGATATTCAGAATCTAGATATCTTTCCTCCAGCTGAAAATCTTCAGAATCCAGAAATCTTTCCTCCAGCTGAAAATATTCAGAATCTAGAAATCGTTCCTCCAGCTGAAAATACTCAGAATCTAGAAATCGTTCCTCGAGCTGAAAACATTCAGAGTCTAGAAATTGTTCCTCGAGCTGAAAATATTCAGAGTCTAGAAAACTTTCCTCCAGCTGAAAATGTTCAGAATCTAGAAATCGTTCCTCCAGCTGAAAATATTCAGAGTCCAGAAATCGTTCCTCCAGCTGAAAATATTCAGAGCCTAGAAATCGTTCCTCCAGCTGAAAATGTTCAAAATCTAGAAATCTTTCCTCCAGCTGAAAATATTCAGAATCTAGATATCTTTTCTCCCGTTGTGTCCTCTACTCCAGTTGAAGATGAAGGTGAAGATGTGCCTGAGTATTGTCCCCGGGCTGTTGTGCAGTATTATCGCATGTATATATCCAATAAGAGCCGGGCTGAGAAAAAAAGATGGATACTAAAGGCAAAGAAGCATCTGTTAGCAGAGGGGTGGGTTTTTGACTATCCACCTGTATTTAATAAGAAAAGGGGAATAATATACGTGTCTCCACAAAATCGGAGATTCCCAACACTCCATGGAGCATGCAAATATTGTATTGAAGAAAGTATTCCTAATTGGAACCTTGAATGGCAGGAGACGGATGAAGATGCTTCTAGTAGTAAATCTATTACAAATCAAAAGAAGAAAAACAAGAGGGATTTGAAGGCCAACACACCCAAGTACCAAAGCAATGGATTGCCTCTACAGGTGCTAAGATCAGATAAGAGAGTGCAAAAGGTGTCTGACCCTGCTCATTTACATCATAAGCCTCTAAATATTCCATCTTATTTGATAGACAGCAACATCATCTTACCAAGGTCTAAGGTTTATTATAATACAAAAGGCAGGCACCGTAAAGTCCGAACTTTGGGTGAGGGGAAAATAAACCGTAATGGAATCAAGTGTAACTGTTGTCTTAAAATATACAGCTTTGCTGGATTCGAAAAACATGTTAGTGGCAGTAGTACCTGCAGACCCTCTGCTAGTATCTTTTTGGATGATGGGAAGTCACTCTTGGACTGCCAGATACAAATGATGCAAAGTCAAAAGACAAGGGAAGCTATTGGAAAATCATTAAGTGATTTGTCTCTAGCCGAGAATGATTACATTTGTTCAGTTTGTCACTTTGGTGGTGAACTTATTTTATGTGATAAATGTCCATCCTCATTCCATAAGACGTGTCTTGGTTTGGAGGATATCCCTGAAGGTGACTGGTTTTGTCCATCATGTTGTTGCGGGATTTGTTGCCAAAGGAAAATTGATGGAGATGAGGTTGAACACTTCCTTTCTTGCATACAGTGTGAACATAAATATCATGTTAGGTGCCTTAAAAAGGGAGCTGCAGATACATCAAGATATAATGGAAACTGGTTCTGTGGAAAAGACTGTGAAAAGATATATGAGGGTCTTCATAAATTATTAGGAGAGCCAGTTCCAGTGGCTAACAATCTAACATGGACATTGGTGAAGTTTATCAACCCTAACAGTTGTGATTTTGGTAATATTGCAAGTGACTTATTGGCAGAAAGTTACTGCAAACTCAATGTTGCTCTTTCGTTGATGCATGAATGTTTTGAGCCCCTAAAGGAATCCTTGACTTGCAGAGATCTCGTGGAAGATGTTATATTCAGCAGAAGGTCAGAGCTTAATCGAATAAATTTCCAGGGTTTCTACACTGTGCTACTTGACAAAAATGAAGAACTGGTTAGTGTGGCAACTGTTAGGGTCCATGGGAAGAAGGTAGCTGAAATACCTCTTGTTGGTACCAGATTACAGTATCGTCGACATGGAATGTGTCGCATTTTAGTAAATGAGCTTGAAAAGAAGCTCATGAAATTAGATGTTGAGAGGCTGGTTTTGCCGGCTGTACCTAGTGTGCTAGAAACATGGACCAACTCTTTTGGCTTCGCAAAGATGACTATTCATGAGAGATCTCAGTTTCTGGGCTATACTTTCCTAGATTTTGAGGGTACCGTTATGTGCCAAAAGTTGTTGATGAATATTGCATCTTCAGATTCAGTTCCGTTAATAGAGTATGAACGTTGCTGTGTTAACCACAGTAAGTCTAGTCCAGTATGTGAAGTACACCAAGGAGAAGATATTGACAAAGAGTGA 3513 0.4028 MVMVDLENNGSRKRKRQIPRKLGVDTKVEVRSMDIGFQGSWHPGTVILCEDLQRRVRYNNILDDKEAYYLEEVVTVSKALDGDIECANCYARGFIRPLPPFVEFDRGDLAFGLCVDVNYEEAWWEGVIFDHCEGMDKRSVFFPDLGDEMQVEIHHLRITQDWDEITEEWTRRENWVFLDLVEEQKSNLFVTVSAKQIWYDIRIKKEFEVIREWTCNLKYLWTELIKEVVNHYLSLTVKEIISVLNLPRSLLNETPEQEFAEAMPNVDLSMIWHDKEIVVQKEIVPPIIQETLPDFQDEISPSGDSPFEEESRENRSTIWKPVKLSGVELCPDAVREYPLASKRKVRAFWMDKLQKHLVCLGWKIVWSNRLNVQRYKYIAPYTHGRRYYLSLIEVCEAMKQDPDMKSLHLQNVRSIMHPTVNCHPSDVPSNLAEDIQNLDIFPPAENLQNPEIFPPAENIQNLEIVPPAENTQNLEIVPRAENIQSLEIVPRAENIQSLENFPPAENVQNLEIVPPAENIQSPEIVPPAENIQSLEIVPPAENVQNLEIFPPAENIQNLDIFSPVVSSTPVEDEGEDVPEYCPRAVVQYYRMYISNKSRAEKKRWILKAKKHLLAEGWVFDYPPVFNKKRGIIYVSPQNRRFPTLHGACKYCIEESIPNWNLEWQETDEDASSSKSITNQKKKNKRDLKANTPKYQSNGLPLQVLRSDKRVQKVSDPAHLHHKPLNIPSYLIDSNIILPRSKVYYNTKGRHRKVRTLGEGKINRNGIKCNCCLKIYSFAGFEKHVSGSSTCRPSASIFLDDGKSLLDCQIQMMQSQKTREAIGKSLSDLSLAENDYICSVCHFGGELILCDKCPSSFHKTCLGLEDIPEGDWFCPSCCCGICCQRKIDGDEVEHFLSCIQCEHKYHVRCLKKGAADTSRYNGNWFCGKDCEKIYEGLHKLLGEPVPVANNLTWTLVKFINPNSCDFGNIASDLLAESYCKLNVALSLMHECFEPLKESLTCRDLVEDVIFSRRSELNRINFQGFYTVLLDKNEELVSVATVRVHGKKVAEIPLVGTRLQYRRHGMCRILVNELEKKLMKLDVERLVLPAVPSVLETWTNSFGFAKMTIHERSQFLGYTFLDFEGTVMCQKLLMNIASSDSVPLIEYERCCVNHSKSSPVCEVHQGEDIDKE* 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0723 1170 PANTHER PHD ZINC FINGER PROTEIN 671 1140 - -
Pvu6g0723 1170 PANTHER PHD ZINC FINGER PROTEIN 9 446 - -
Pvu6g0723 1170 PANTHER PHD ZINC FINGER PROTEIN 552 660 - -
Pvu6g0723 1170 Pfam PHD-finger 836 878 IPR019787 -
Pvu6g0723 1170 ProSiteProfiles Zinc finger PHD-type profile. 834 879 IPR019787 -
Pvu6g0723 1170 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 552 660 - -
Pvu6g0723 1170 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 671 1140 - -
Pvu6g0723 1170 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 446 - -
Pvu6g0723 1170 SMART PHD_3 880 929 IPR001965 -
Pvu6g0723 1170 SMART PHD_3 836 877 IPR001965 -
Pvu6g0723 1170 MobiDBLite consensus disorder prediction 670 693 - -
Pvu6g0723 1170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 828 877 IPR013083 -
Pvu6g0723 1170 CDD NAT_SF 1026 1086 - -
Pvu6g0723 1170 Pfam Agenet domain 26 100 IPR008395 -
Pvu6g0723 1170 SUPERFAMILY FYVE/PHD zinc finger 813 876 IPR011011 -
Pvu6g0723 1170 Pfam Tify domain binding domain 759 811 IPR032308 -
Pvu6g0723 1170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 878 932 IPR013083 -
Pvu6g0723 1170 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1007 1110 IPR016181 -
Pvu6g0723 1170 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 970 1131 IPR000182 GO:0016407
Pvu6g0723 1170 SMART agenet_At_2 107 164 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0723 Pvu-Chr6 18801619 18809614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0723 31 407 PHD Transcription Factor Family AT5G58610 35.872 3.27e-58 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu6g0723 Agenet 7.3e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0723 - - pvu:PHAVU_006G069100g 2421.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0723 6 18801619 18809614 Pvu6g0723 6 18801619 18809614 ECH
Pvu6g0723 6 18801619 18809614 Pvu8g2688 8 57288733 57292987 PCT