Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0707 ATGGGAAAGTGCTCCTTCAAGGACTCTCTTAAAGCTCTGGAAGCTGATATTCAGTATGCTAATACCCTGGCATTGGACTATCCAAGGGACAGAGACGGAGGATGCTTTCAGATGAGGATATCTTACAGTTCAGCAGCCCCTCTTTTTCTATTTCTTCTTCAGTGGACTGATTACCGCTTGGCTGGTGCTCTGGGTTTGCTGAGAGTTCTAATTTATGTGAGTTATGGAAATGGGAAGAATACTATGACAGTATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGAATCACGGATTTGGAGGAAAGGAAACAGAAAGAAGTCGCTCTTAGGTACAAAGGAAAGAGTGGCTTCATGGAGAGAGAACAATCTGATGTTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTGGAGGTGAAAGCTAAAGTTGTGTTGCCTGATTGCTGCCACTATATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAATCTTGTCCCTTTTGCCGGGATAGCCTGAAGAGAATAAACTCTGGGGACCTTTGGATTTACACAGACATGAATGATATTGTTGATATTGGGACAATTTCCAGAGAGAATTGCAAGAGGCTGTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCAAGATCTGTGTTCTATGATCCATTTCTGAGATGA 729 0.4143 MGKCSFKDSLKALEADIQYANTLALDYPRDRDGGCFQMRISYSSAAPLFLFLLQWTDYRLAGALGLLRVLIYVSYGNGKNTMTVYERKASIRQFYSVIFPALLQLEKGITDLEERKQKEVALRYKGKSGFMEREQSDVDIEREEECGVCLEVKAKVVLPDCCHYMCLKCYRDWCQRSQSCPFCRDSLKRINSGDLWIYTDMNDIVDIGTISRENCKRLFLYIEKLPLIVPDPRSVFYDPFLR* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0707 242 SMART ring_2 146 183 IPR001841 -
Pvu6g0707 242 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Pvu6g0707 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 193 IPR013083 -
Pvu6g0707 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Pvu6g0707 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 242 - -
Pvu6g0707 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Pvu6g0707 242 PANTHER RING FINGER PROTEIN 41, 151 1 242 - -
Pvu6g0707 242 SUPERFAMILY RING/U-box 134 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0707 Pvu-Chr6 18607171 18610137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0707 96 189 C2H2 Transcription Factor Family AT5G39550 26.531 1.66e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0707 - K25840 gmx:100808567 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0707 6 18607171 18610137 Pvu6g0707 6 18607171 18610137 ECH