Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0693 ATGTTTAGAGATCACGCATTTTGCAGTTACTGCATATCCAAGTATGTGGGAAGTGAAATAAACAAAAGTGTTCACGATGTGAAATGTCCATACCCTGAATGTTCTGTGGTATTGAAACCTCAATTTCTGCGTACCATTTTGCCCAGTGAAGTTGTTGAAAAATGGGAATCTCGGAGATGTGAGTATTCGATTGTTGGGTCGCAAAGGACTTACTGCCCCTTCAAGGATTGTTCAGGTCTGTTGGTGAATGAATCAGAAAAGGTTGTGACCAGTGCTGAGTGTCCCTATTGTCATAGGCTATTTTGTGCACAGTGTAGGGTTCCTTGGCATGGAAATATGAGTTGTGGGGAGTTTCAAAGGAAAAATAAAGACCCGGATGCCAAGTTTTTCAAGTTGGCCAAAGAGAAAAATTGGCAGAAATGTGTTGAGTGCAGTATGTATGTTCAGAAACTTGATGGATGTGAACACGTGACTTGCAGGTGTGGATACCAGTTCTGCTACATTTGTGGAAAGACATGGGACTATGGTCATGAATGCAAGAGTAATTCGATTCTGGAGCGGATACAATCCGCATATTATTCATATACAAGGTGA 594 0.4141 MFRDHAFCSYCISKYVGSEINKSVHDVKCPYPECSVVLKPQFLRTILPSEVVEKWESRRCEYSIVGSQRTYCPFKDCSGLLVNESEKVVTSAECPYCHRLFCAQCRVPWHGNMSCGEFQRKNKDPDAKFFKLAKEKNWQKCVECSMYVQKLDGCEHVTCRCGYQFCYICGKTWDYGHECKSNSILERIQSAYYSYTR* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0693 197 SUPERFAMILY RING/U-box 4 62 - -
Pvu6g0693 197 ProSiteProfiles TRIAD supradomain profile. 1 197 IPR044066 -
Pvu6g0693 197 SUPERFAMILY RING/U-box 63 121 - -
Pvu6g0693 197 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 4 179 IPR031127 GO:0004842|GO:0016567
Pvu6g0693 197 SUPERFAMILY RING/U-box 127 180 - -
Pvu6g0693 197 SMART ibrneu5 53 115 IPR002867 -
Pvu6g0693 197 SMART ibrneu5 126 179 IPR002867 -
Pvu6g0693 197 Pfam IBR domain, a half RING-finger domain 66 115 IPR002867 -
Pvu6g0693 197 Pfam IBR domain, a half RING-finger domain 132 179 IPR002867 -
Pvu6g0693 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 66 IPR013083 -
Pvu6g0693 197 Gene3D - 113 196 - -
Pvu6g0693 197 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 4 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0693 Pvu-Chr6 18463394 18464282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0693 5 170 C3H Transcription Factor Family AT2G19610 32.961 2.86e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0693 K11975 - mtr:MTR_3g462570 239.195