Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0678 ATGGCATCATCCATTAACACCTTCTTCAACAAGTTCCTCTATCTCCTCATCCTCTTGCTCCACCTTGGCTGCTTCCTCTTCACCACCACCACCGCCGGAGGAAAAAAAGCACCGCTGTCAAAGAAACGCAAAATCTTACCTTCATCCCAACCTTCCTCCCCTTCCCACCCAAAATTCAAAACCCACAAAGCCCTGTCCTCTTCTTGGCATTTCATCAAACACCTCCTTTCCACCAACTCCTGCAAAACCCCCAAAACTGTCACCGCCCAATCCTCCCCTCAATCCACCGCCACTGCCTCCACAACCACTGTCTCCGCCGCTGCAGCGCGCTCCCTCGTTTCACTAACACAACCCGACCCGGACAGAAAACCACCCGGGTCGTGTCCCGAATCTGACATCTCCGCCGACACCAACCTCTTCTTCCCTCTCCGCAACGACATATTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAACCCCACCTCTTGGAAACCCACCAAACCCTCAAGCACGCGGTTTCGGACCTGTCCGGATCCGACCCGGGTCACAACATCGTCCAGATAATCTTCAAATCGGGTTGGCCCGAATCCAAACCCTCCCCCACCATAACCCGCATCCTCAAGATCCACAACAGCCCGAAGATCCTCGCGAAGTTCGAGGAGTACCGCGAGGTTGTCAAGTCCAAAGCGGCGCGTCACGGAGCCCTCACGCGCCGCCGAGACGAGCGCTGCATCGCCGACGGCAACGAGCTCATGCGCTTCCACTGCTCCACGTTTCTATGCGACTTGGGACACAGTGGGGATTCCTCAATTTGTTCGCAGCAATTTTGTAACATATGTGGAATTATTAAGTCAGGGTTTTCCCCGAAACTCGACGGAATTGCCACGCTGTCCACCAGCTGGCGGGCACACGTGGCTATCCCGGATGACGTGGAACGAGAATTCAGCTTCATGAATGTCAAACGGGCCATGCTCGTTTGTAGGGTCATTGCGGGTCGGGTTGGATCCGATTCAGACGACGCCGAAAAAGCTGATGGAGGTTTTGATTCGGTAATGGCGAGGCCAGATACTGGGGTTTACACCCGGCTCGATGAGGAGGAGTTGTTGGTGTTTAATCCTAGGGCTGTTCTTCCTTGCTTTGTGATTGTGTATAGTGTCTGA 1161 0.5461 MASSINTFFNKFLYLLILLLHLGCFLFTTTTAGGKKAPLSKKRKILPSSQPSSPSHPKFKTHKALSSSWHFIKHLLSTNSCKTPKTVTAQSSPQSTATASTTTVSAAAARSLVSLTQPDPDRKPPGSCPESDISADTNLFFPLRNDIFPCTACGEIFQKPHLLETHQTLKHAVSDLSGSDPGHNIVQIIFKSGWPESKPSPTITRILKIHNSPKILAKFEEYREVVKSKAARHGALTRRRDERCIADGNELMRFHCSTFLCDLGHSGDSSICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPDDVEREFSFMNVKRAMLVCRVIAGRVGSDSDDAEKADGGFDSVMARPDTGVYTRLDEEELLVFNPRAVLPCFVIVYSV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0678 386 SUPERFAMILY ADP-ribosylation 175 385 - -
Pvu6g0678 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 172 IPR013087 -
Pvu6g0678 386 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 385 - -
Pvu6g0678 386 MobiDBLite consensus disorder prediction 112 131 - -
Pvu6g0678 386 ProSitePatterns Zinc finger C2H2 type domain signature. 150 171 IPR013087 -
Pvu6g0678 386 MobiDBLite consensus disorder prediction 45 60 - -
Pvu6g0678 386 PANTHER NUCLEIC ACID BINDING PROTEIN 4 385 - -
Pvu6g0678 386 MobiDBLite consensus disorder prediction 33 60 - -
Pvu6g0678 386 Gene3D - 171 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0678 Pvu-Chr6 18304785 18306947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0678 69 386 C2H2 Transcription Factor Family AT2G29660 55.183 2.61e-110 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu6g0678 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0678 - - var:108341815 678.707