Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0676 ATGAAAAGTATAGGAGGAGGTGGTGCCATTATTCCAGTTAATGGATGTGGAAATATAAAGGTCTCTAACCCTTCCAAGTGTTCTGTTGGTCCTCCTTTGACAGCCATAGAAAGGTTTTTGTGGGCACAACAAAGTCATACTACTCAGCAACCGCCACAGAATGTTGTGAACAAAATCCATGCAAGTGCTTTGGATGGTTTTGGTGGCTCAACCTACAACATTGTGTGGAATAATGGTGCTAGGGAAGTGAACTTTGTTGAACAGCTTTTAGCAAATGAAGTGGCTTTGAATTGGACACAACAAGTCCCTCCACTGTGCTTGAAGGAAGATTTGCATGTGTCAGGGAAGAACCGAAAAAGGGTGGGACGCAGACCTAAGGAAGGGTCTTCTGTGCCTTTGATCAAAGGCCAGTGGACTGAAGAAGAAGACAGGAAACTGCTAAAGTTGGTGAAGCAACATGGTACAGGCAAATGGTCTCAGATAGCTGAAAAGTTGGATGGAAGGGCTGGGAAACAATGTCGAGAGAGATGGCATAATCATCTGCGACCTGATATTAAGAAAGATGCTTGGAGTGAGGAAGAAGAAAGGATATTAGTCCAATATCATGCCAAGCTTGGAAACCGCTGGGCAGAGATTGCAAAGCAAATGAAAGGAAGAACTGAAAATGCCATAAAAAACCATTGGAATGCCACCAAGAGGAGACAAAACTCAAGAAGAAAGAACAAAAGACCAGGAATCGCAAATGGAAAGCCATTGTCCTCTATTCTGCAGGACTACATCAAAAGTTTGGCTCTCACCAACACTTCAACTCCCTCTGTGGAACAAACATTAGCACCCCAACACTTGGCTGATATTGTTGTTACCAACGACAATTTCTCACTAATGTCGGAGTCCTATGATGATGAGATGTTCTTCATGCAACAACTTTTGGATCAGAATAATATCATTGTTGAATCTGTTAAGCAGACCAAGAATATCAATAACTCTTCTGCAGCCTTTGATGGTTATCATAAGCAAACTAGTAACAATAGTCAGTTTCTCACTGAAGTCACTCCATCAGGGTCTGTTCATTCCAACCTAACAAACTCACACATGTCCTTCGATGAGAGTCTTTTCCACTCTAAAAGGACTCCTACTGCTGTCAGCTTCCTTGATTTTGATGTCTGTCTCTCTCATTTACATAATGGAACTTCTGGTTCATCATTTTTCAACAATAATGGGATTCACAACCAGAACATGGAGTTGCATTTGGGGAAGCAAGATTGCTTTGAAGAACGAAAGATAATAAAGAGGAATAGCATTCAACACTAA 1311 0.415 MKSIGGGGAIIPVNGCGNIKVSNPSKCSVGPPLTAIERFLWAQQSHTTQQPPQNVVNKIHASALDGFGGSTYNIVWNNGAREVNFVEQLLANEVALNWTQQVPPLCLKEDLHVSGKNRKRVGRRPKEGSSVPLIKGQWTEEEDRKLLKLVKQHGTGKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDAWSEEEERILVQYHAKLGNRWAEIAKQMKGRTENAIKNHWNATKRRQNSRRKNKRPGIANGKPLSSILQDYIKSLALTNTSTPSVEQTLAPQHLADIVVTNDNFSLMSESYDDEMFFMQQLLDQNNIIVESVKQTKNINNSSAAFDGYHKQTSNNSQFLTEVTPSGSVHSNLTNSHMSFDESLFHSKRTPTAVSFLDFDVCLSHLHNGTSGSSFFNNNGIHNQNMELHLGKQDCFEERKIIKRNSIQH* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0676 436 SMART sant 186 234 IPR001005 -
Pvu6g0676 436 SMART sant 134 183 IPR001005 -
Pvu6g0676 436 Pfam Myb-like DNA-binding domain 138 195 - -
Pvu6g0676 436 CDD SANT 138 181 IPR001005 -
Pvu6g0676 436 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
Pvu6g0676 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 185 IPR017930 -
Pvu6g0676 436 SUPERFAMILY Homeodomain-like 132 228 IPR009057 -
Pvu6g0676 436 PANTHER MYB PROTEIN-RELATED 39 407 - -
Pvu6g0676 436 Gene3D - 134 186 - -
Pvu6g0676 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 236 IPR017930 -
Pvu6g0676 436 Gene3D - 189 245 - -
Pvu6g0676 436 ProSiteProfiles Myb-like domain profile. 135 181 IPR001005 -
Pvu6g0676 436 CDD SANT 189 232 IPR001005 -
Pvu6g0676 436 PANTHER MYB TRANSCRIPTION FACTOR 39 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0676 Pvu-Chr6 18275268 18280565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0676 29 400 MYB Transcription Factor Family AT5G58850 39.801 2.04e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu6g0676 Myb_DNA-bind_6 1.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0676 K09422 - gmx:100786295 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0676 6 18275268 18280565 Pvu8g2714 8 57495534 57499501 PCT