Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0670 ATGTCGTACTCACGGAGGTCAAGGTACTCTCCTTCTCCTTCCCCTTATCCATACAAGCGATATGGTAGGTCTGTGTCCAGGTCTCGCTCTCTCTCGAGGTCCATATCCAGAAGTCGTTCAAGGAGTGTATCACTGGATGCAGAAAATCCAGGAAACAATCTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGGGAACTGGAGAAGCATTTTGCTGCCGAGGGTAAAGTGAGAGATGTACATCTGGTGGTTGATCCTTGGACAAGGGAATCCCGTGGTTTTGGTTTTGTGACAATGGAGACTGTTGAGGTGGCTGATCGATGTGTAAAGTATTTGAATCGCTCTGTACTTGAAGGGCGTGTCATTACAGTGGAGAAGGCCAGAAGGCGACGAGGTCGAACCCCAACACCAGGGAAGTATCTCGGGCTGAGAACTATTCGTGGGCGACGCCGCTCTCCAAGTTACTCTTCTCGTCGCTCCCCTAGCTATTCTCCTTACAGAAGAAGCTACAGTCGGTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATGGGCGGAGGCGATCATACTCTCCAGATTACTCCCAGAGAAGGAGGTCTTACTCTCCATACTACAGCCGGGACAGGTCTTATGTGCGATATGATCATTATCGACACAGATCATATTCTCGCTCTCGCTCTCCTTATAGCAGGTCTCCTGTCAGCATGCGTGACAGATCATACTCTCCTTATGACTCCCGATATGACTTGCCTGATGGTTCCTACTACAGAAGGAACCGTTACAGGTCTGTTTCCAGAAGTGCCTCACCCAATGATCGATATTTTGGAAGGAATCGGTACAGATCTGTTTCTCACAGTGCCTCACCTAGGTCAAGGAGAAGGTCAAGGAGGAGCTACTCACGGAGTGCCACTCCTGTTTCAAAGAGGAGAGACTCGCGAAGTGTGTCCCCCAGGTCAAGGAGGAATCATTGTAGAAACTCCAGGAGAAGTGCCAAACATTCGAAACCTGTGTCAAGATGCTCCTCTGTTATTGCAAGTTCAAGATCAGTATCCAGGTCTAATACTCCAACATCTTCCTCTCCTTCAACTTGA 1110 0.4874 MSYSRRSRYSPSPSPYPYKRYGRSVSRSRSLSRSISRSRSRSVSLDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVRDVHLVVDPWTRESRGFGFVTMETVEVADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTIRGRRRSPSYSSRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPDYGRRRSYSPDYSQRRRSYSPYYSRDRSYVRYDHYRHRSYSRSRSPYSRSPVSMRDRSYSPYDSRYDLPDGSYYRRNRYRSVSRSASPNDRYFGRNRYRSVSHSASPRSRRRSRRSYSRSATPVSKRRDSRSVSPRSRRNHCRNSRRSAKHSKPVSRCSSVIASSRSVSRSNTPTSSSPST* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0670 369 MobiDBLite consensus disorder prediction 156 184 - -
Pvu6g0670 369 SUPERFAMILY RNA-binding domain, RBD 47 156 IPR035979 GO:0003676
Pvu6g0670 369 Gene3D - 6 136 IPR012677 -
Pvu6g0670 369 PANTHER TRANSFORMER-2-RELATED 10 280 - -
Pvu6g0670 369 MobiDBLite consensus disorder prediction 1 51 - -
Pvu6g0670 369 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 10 280 - -
Pvu6g0670 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 123 IPR000504 GO:0003723
Pvu6g0670 369 MobiDBLite consensus disorder prediction 25 51 - -
Pvu6g0670 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Pvu6g0670 369 SMART rrm1_1 53 126 IPR000504 GO:0003723
Pvu6g0670 369 MobiDBLite consensus disorder prediction 342 369 - -
Pvu6g0670 369 MobiDBLite consensus disorder prediction 320 341 - -
Pvu6g0670 369 MobiDBLite consensus disorder prediction 129 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0670 Pvu-Chr6 18171085 18174725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0670 53 167 Eukaryotic Initiation Factors Gene Family AT2G36660 30.435 1.87e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0670 - - gmx:100808038 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0670 6 18171085 18174725 Pvu6g0670 6 18171085 18174725 ECH