Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0660 ATGATCAATGGTCCTCCAATAATGCTACCGGAAGCAACTTCCCTCTCCGGTCACCCTCATCAAGATGTTGTGGAAGCTCCTTTAATGTTGCCACCGTCTCAAACATCCAAACAGTGTGGAATCCAGGTTCAGTCCAATAAACGAAAAAAAATTACCTGGACTATGGAAGAGCATAGATTGTTTTTGGAAGGACTTTCCATGTACGGGAGAGGATATTGGAAAAAGATTTCATATTACATTCAAACAAAAGATGCAACTCAGGTGGCGAGTCATGCACAAAAATATTTTATGCGTAACAAAATATCGCAAGAGAAAAAGAAAAGGAAAAGCATTCATGACATGGTGTTAAGTCAACCAATGCAAGTGCAAGAAGGGATACACTTCAATCCTCCTATCAACATGCCTCATCCAGTACATCTAAATCTTGTTAATGTGACTCATCAAATACCACCAATAACAGGAATGATGCAGTCAAATCATATCAACCATATAAATCATCATCCACAATATAATGGAATAGATCAAATGATGGAGGACAATTATATCAATAACGTAGTATATCCTACACTGTTTGATTAG 579 0.3748 MINGPPIMLPEATSLSGHPHQDVVEAPLMLPPSQTSKQCGIQVQSNKRKKITWTMEEHRLFLEGLSMYGRGYWKKISYYIQTKDATQVASHAQKYFMRNKISQEKKKRKSIHDMVLSQPMQVQEGIHFNPPINMPHPVHLNLVNVTHQIPPITGMMQSNHINHINHHPQYNGIDQMMEDNYINNVVYPTLFD* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0660 192 Pfam PHR domain 42 128 IPR012983 -
Pvu6g0660 192 CDD SANT 52 96 IPR001005 -
Pvu6g0660 192 ProSiteProfiles SANT domain profile. 53 100 IPR017884 -
Pvu6g0660 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 100 IPR017930 -
Pvu6g0660 192 PANTHER TRANSCRIPTION FACTOR SRM1 42 150 - -
Pvu6g0660 192 SUPERFAMILY Homeodomain-like 47 99 IPR009057 -
Pvu6g0660 192 Pfam Myb-like DNA-binding domain 52 96 IPR001005 -
Pvu6g0660 192 PANTHER TRANSCRIPTION FACTOR KUA1 42 150 - -
Pvu6g0660 192 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 98 IPR006447 GO:0003677
Pvu6g0660 192 ProSiteProfiles Myb-like domain profile. 45 96 IPR001005 -
Pvu6g0660 192 SMART sant 49 98 IPR001005 -
Pvu6g0660 192 Gene3D - 51 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0660 Pvu-Chr6 18051405 18052096 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu6g0660 Myb_DNA-binding 9.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0660 - - pvu:PHAVU_006G063000g 405.601