Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0652 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGCGGTATTGGTTATAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAATGCCCTAATGGTGATTCTGAATCCAACGAAGAAGGGCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAAGATTCGCAGCCTGCTGCTCCTAACGAACCAGGAAATTATGGGCAAGAACAGCAAGGGATCCAGCATACTGCATCATCTGCTCCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCGTATTATGGGAGCATGATGGCAGTTTATGGTCACCAGCAGTTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCATGAGTCTCGGCACCAGCATGCTCTGAGAAGGGCAAGGGGTACCGGAGGACGATTTGCAAAGAAATCTGATGCTGAGGGCTCAAACAACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAGTCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCAAAAGTACACAACCGGTTCGAAGCACCTGGTTACCAAAATGGCAGTGGCGCTTACCATAATCATCACGGTTTGCAATCTTCAGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAGCAACTAAACCACAATTGA 1017 0.4621 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNEPGNYGQEQQGIQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGSMMAVYGHQQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKSDAEGSNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVHNRFEAPGYQNGSGAYHNHHGLQSSVYHSSSGERVEEGDCSGQQLNHN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0652 338 MobiDBLite consensus disorder prediction 1 30 - -
Pvu6g0652 338 MobiDBLite consensus disorder prediction 246 285 - -
Pvu6g0652 338 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Pvu6g0652 338 MobiDBLite consensus disorder prediction 1 20 - -
Pvu6g0652 338 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Pvu6g0652 338 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Pvu6g0652 338 MobiDBLite consensus disorder prediction 209 338 - -
Pvu6g0652 338 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Pvu6g0652 338 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 335 - -
Pvu6g0652 338 MobiDBLite consensus disorder prediction 87 116 - -
Pvu6g0652 338 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Pvu6g0652 338 MobiDBLite consensus disorder prediction 44 116 - -
Pvu6g0652 338 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 335 IPR001289 GO:0003700|GO:0006355
Pvu6g0652 338 Gene3D - 174 236 - -
Pvu6g0652 338 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Pvu6g0652 338 MobiDBLite consensus disorder prediction 209 228 - -
Pvu6g0652 338 MobiDBLite consensus disorder prediction 306 321 - -
Pvu6g0652 338 MobiDBLite consensus disorder prediction 44 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0652 Pvu-Chr6 17951993 17956210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0652 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.208 1.99e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pvu6g0652 CBFB_NFYA 5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0652 K08064 - gmx:100808378 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0652 6 17951993 17956210 Pvu6g0652 6 17951993 17956210 ECH
Pvu6g0652 6 17951993 17956210 Pvu8g2920 8 58876841 58880492 PCT