LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g0639	ATGGGGGGAAGCGACAGCGAGGTAGAGAAATCGGCGCAGAAGGAGAAGGAGAAGAAGAAGATGCAGGCTCTCGCTCCCATCGCTAAGCCCCTTGCTGGGAAGAAGCTTTGCAAGCGTACCCTAAAACTTGTTCGCAGAGCCGCTGAACACAAATGCTTAAAGAGAGGAGTCAAGGAGGTCGTTAAAAGCATTCGCAGAGGCCAAAAAGGATTTTGTGTTATCGCTGGCAACATTTCACCCATCGATGTCATCACCCATGTTCCCGTTCTCTGTGAAGAGTCTGACATTCCATACGTATATGTCCCATCTAAAGAAGACCTTGCTGGTGCAGGTGCAACTAAGAGGCCTACTTGCTGTGTTTTGGTACAGACGAAACCTACAAAGGGTGAATTAGAGCAAGGGGAACAAGAGAAACTAAAATCTGATTATGATCAAGTTGTATCGGAAGTTAATGAGCTTACAGCTTCACTTTTTTGA	477	0.4633	MGGSDSEVEKSAQKEKEKKKMQALAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVITHVPVLCEESDIPYVYVPSKEDLAGAGATKRPTCCVLVQTKPTKGELEQGEQEKLKSDYDQVVSEVNELTASLF*	159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g0639	158	MobiDBLite	consensus disorder prediction	8	23	-	-
	Pvu6g0639	158	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	41	125	IPR004038	-
	Pvu6g0639	158	PRINTS	Ribosomal protein L7A/RS6 family signature	53	67	IPR018492	-
	Pvu6g0639	158	PRINTS	Ribosomal protein L7A/RS6 family signature	72	85	IPR018492	-
	Pvu6g0639	158	PRINTS	Ribosomal protein L7A/RS6 family signature	88	98	IPR018492	-
	Pvu6g0639	158	PRINTS	Ribosomal protein L7A/RS6 family signature	98	112	IPR018492	-
	Pvu6g0639	158	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	3	157	-	-
	Pvu6g0639	158	PRINTS	High mobility group-like nuclear protein signature	26	39	IPR002415	GO:0003723\|GO:0005730
	Pvu6g0639	158	PRINTS	High mobility group-like nuclear protein signature	39	54	IPR002415	GO:0003723\|GO:0005730
	Pvu6g0639	158	PRINTS	High mobility group-like nuclear protein signature	56	66	IPR002415	GO:0003723\|GO:0005730
	Pvu6g0639	158	PRINTS	High mobility group-like nuclear protein signature	100	112	IPR002415	GO:0003723\|GO:0005730
	Pvu6g0639	158	PANTHER	-	3	157	-	-
	Pvu6g0639	158	Gene3D	-	18	155	IPR029064	-
	Pvu6g0639	158	MobiDBLite	consensus disorder prediction	1	23	-	-
	Pvu6g0639	158	SUPERFAMILY	L30e-like	20	127	IPR029064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g0639	Pvu-Chr6	17802241	17803623	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu6g0639	9	149	Cytoplasmic Ribosomal Protein Gene Family	AT2G47610	27.465	8.60e-07	45.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g0639	K11129		-	gmx:100305515	276.944