Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0632 ATGAAGATCACTGTCATGACTGCTGATGAGCAAATTCTCACATTGGATGTGGATCCCCAAGAATCTGTGGAGAACGTCAAAGCATTGCTCGAGGTTGAGACTAGTGTGGCTCTTCAACAACAACAGCTTCTGTTCAATGGGAAGGAGGTGAGAAATTCTGAGAAGTTGAGTGCTCTCGGTGTTAAGGATGATGATTTGCTGATGATGGTGTCTGGCGCTGGGGCCGCCTCCGCGGCTTCTAGTGGGTCTACCAATGATTTGAGTTTGAATACTGATGGTTCGGCTGTCAACCCTAGTGCTTTCCAGCAGCACATAAGACGAGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAATAGATTGCAAGAAGTTTTGCGATTGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAAGAAGAAGAACTTGCTCTTCTCTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCTATCCGGCAGAAAGGGATTGATGAAAATTGGGCAGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTTATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGCTGAGACTTTTAGATCAGCGATACAGAGGGATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCATGCTCATTCTTGGTGCTGGACTCTCCCAATATGGAGTTTCTCTTTGGACTGGATATGCTCCGAAAACACCAGTGTATAATTGATTTGAAAGAAAGTGTTATGCGAGTTGGAGGAGGAGAAGTTTCTGTGCCATTTTTACAAGAGAAAGATTTACCATCTCGGTTTTTAGACGAGGAGAGAGCTTCTGGCTCTGGTGGTCAAATTACATCAGGAAGCAATAATCCACCAACTGGAGGCCACCCTTCTGGAGGAGCTTCTAGTGACAAGGATTCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTGGAGTTGGGATTTGGAAGAAATGCAGTTGTAGAAGCTCTGCAATTATTTAATGGCAATGAGGAACAGGCTGCTGGCTTTCTTTTCGGGGGATAG 1215 0.4362 MKITVMTADEQILTLDVDPQESVENVKALLEVETSVALQQQQLLFNGKEVRNSEKLSALGVKDDDLLMMVSGAGAASAASSGSTNDLSLNTDGSAVNPSAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNRLQEVLRLRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKESVMRVGGGEVSVPFLQEKDLPSRFLDEERASGSGGQITSGSNNPPTGGHPSGGASSDKDSEFEAKVAKLVELGFGRNAVVEALQLFNGNEEQAAGFLFGG* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0632 404 Gene3D Acid Proteases 180 326 IPR021109 -
Pvu6g0632 404 CDD UBA_scDdi1_like 367 402 - -
Pvu6g0632 404 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Pvu6g0632 404 Gene3D - 1 85 - -
Pvu6g0632 404 Coils Coil 134 154 - -
Pvu6g0632 404 MobiDBLite consensus disorder prediction 336 354 - -
Pvu6g0632 404 PANTHER AT13091P 1 402 - -
Pvu6g0632 404 SUPERFAMILY UBA-like 347 404 IPR009060 GO:0005515
Pvu6g0632 404 Pfam UBA/TS-N domain 367 400 IPR015940 -
Pvu6g0632 404 Pfam Aspartyl protease 179 301 IPR019103 GO:0004190|GO:0006508
Pvu6g0632 404 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Pvu6g0632 404 SMART ubq_7 1 72 IPR000626 GO:0005515
Pvu6g0632 404 MobiDBLite consensus disorder prediction 331 364 - -
Pvu6g0632 404 Gene3D - 338 404 - -
Pvu6g0632 404 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 402 - -
Pvu6g0632 404 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Pvu6g0632 404 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Pvu6g0632 404 SUPERFAMILY Acid proteases 187 302 IPR021109 -
Pvu6g0632 404 SMART uba_6 366 403 IPR015940 -
Pvu6g0632 404 CDD RP_DDI 186 309 IPR019103 GO:0004190|GO:0006508
Pvu6g0632 404 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 361 404 IPR015940 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0632 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 5.45e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0632 K11885 - gmx:100779464 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0632 6 17730940 17738614 Pvu6g0632 6 17730940 17738614 ECH