LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g0621	ATGCAGGGAGGTTCATCCAATAAAGTTGTGGACTGCATTCTATGTTTGAAGGGGTTTTATGAATGGAAGTTATCTGGTGGGGTTGGTGTGTGGAGGTATGGTGGAACTGTGAGGATCACTTCCTTTCCAAAGAAGTCTCCTTCCTCCATAGTTGGCAGTGAAAGTGCTGATGAATCACTGGATGAGTCAGAATCATCACAGTATGAACAACTGCTAGAATTTCTTCAATTATCTGAAGAGTTCTTGATTGAAGAAACAAGAACTGCCAATGCTCTGGCTTTCCTTTATGATCACTTTGGACTCAGACTTCTTCAGGCTTACCTTAGAGAGGCCAATGGGATTGAAGATCTGCCTCTGAATGCAATGGTAATTGATACCTTACTCAGCAAGGTAGTCAAGGATTTCTCATCTTTGCTTGTTTCTCAGGGCACTCAGCTTGGACTTTTCTTGAAGAAAATATTGAAAGGTGACATGGGTTGTCTCTCAAAGAGAGAGTTCATAGAAACCATCTCACTATATCTTAGCCAAAGAAGTAGCCTGGCATCAAATGACTTCTCCAAATTCTGCAATTGTGGTGGAAAACGTGATAGTTATCGACAAAAAGCCAATTGTTCTGCAAAATATTCTGAAGTAATCGATACTCAACAGAAACAACTTGAGGGTATGAAGTACTTTTTTGAGGAAACAAAATTGGAGGTCAAACAAATTCAATCAGAGTGGGAAGAAGAATTTAGTAGGCTTGAGGATCATATCAAAAGCCTTGAAGTGGCCTCCACTTCCTACCACAAAGTTTTGGAGGAGAACCGGCTTCTATACAATCAAGTACAAGACCTCAAAGGAGCCATTAGGGTGTATTGTAGAGTGAGGCCATTCTTACCAGGACAATCAAATGGGCAGTCTACGGTCGACTATATTGGAGAAAATGGAGATATGATGATCGTAAATCCCCTTAAGCATGGAAAAGATTCTAGACGAGTATTTTCATTCAATAAGGTTTTTGGAACAACTGTAACACAAGAACAAATTTATGCTGACACTCAGCCCTTGATCAGATCCGTTCTGGATGGTTATAATGTATGCATCTTTGCATATGGGCAGACTGGCTCAGGGAAAACATACACAATGAGTGGCCCTGATCTTACAACAGAAGACACATGGGGTGTAAACTATAGGGCATTGGGTGATTTATTTCATATATCAAAGGAAAGGTCTGATTCCATAAAATATGAAGTTTTCGTTCAGATGATTGAAATATACAATGAACAAGTGAGAGATTTGCTAGTCACTGATGGCTCTAACAGAAGATTAGACATACGAAACAATTCTCAAATGAATGGCATCAATGTCCCTGATGCCTTTTTAGTTCCAGTTACCTGTACTCAAGATGTTCTAGACTTGATGAGAATTGGTCAGAAGAACCGTGCCGTGGGTGCTACAGCTCTAAATGAGAGAAGCAGTCGTTCCCATAGTGTTTTGACTGTTCATGTTAGAGGAAGGGAGTTAGTTTCCAACTCCATTCTCAGAGGTTGTCTCCATCTTGTGGATTTGGCTGGAAGTGAGAGGGTTGACAAATCTGAGGCAGTTGGTGAGAGACTAAAGGAAGCTCAACATATAAATAGATCACTTTCTGCACTTGGGGATGTTATCTCTGCCTTGGCACAGAAGAATCCCCATATCCCTTATAGAAATAGCAAGCTCACACAAGTTTTACAAGACTCTTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATATAAATCCTGAACTTAATGCTTTTGGAGAGACAATTAGCACACTCAAGTTTGCTGAGAGGGTTTCATCCATTGAACTTGGGGCTGCGCAATCTAACAAAGAAACTGGTGAAATCCGAGAACTAAAGGAAGAGATATCAAATCTCAAATTGGCATTGGAGAGGAAGGAAGCAGAACTGGATCAGTGGAAGGCTGGGAATGCTAGAAACGCCATTGATTCTCAAAAACCAAGAGCTGTTTCACCTTTTCAATTACCAAAATATGGTACCAATGGCAATACGAAGCATGAAACTGGTCAAAGACTTATGGATGATAGAAGCTTTGAGTCTAGAAGTTGCTCTTCAGGTAAGCAAAGAAGGTCACGATTTCCCTCAACATTTATGGACAAGGACTCTATGCCAAAAATGTCTTTCCTGACTGAAGAAAAGTTAGTGAGCTCAGGGAAGGGAAGATCACCATCCCCTCCAGTGAGAAGATCACAATCCAATGATAGAGGGACATCCATTAAAAGCAAGGTCAAAACTGAAACAATAGACAACCAACCAATATTAAAGCATCCATTTCCAGCTGCTAACAAATCCCTTGTCACAATGCCAGTGGTTGCATCCACTGACAATAACACAAGAATGTATGTGAATTCACAAGAGCAAGTAAAGCATGAAAACATTTCGGAAACAATCTTCAATCTCCAGAAGCTCAACTATAAGAAAGTTCATCAAGAAAATGAAGAGGAACAATTCAAGCAAGCACTTAGTGCAGTAAGACAAGGTGGGATCAGAAAAAGCAAGGTTGAGAGTAAGGCTAAGGCCAAGCATAATCAACTATCACCCTTTAAGATTCAAAAGCCTGATTTGACCTCACCATTCATTCCTGAGATGGAATTTACTAGTGAAAGTAATGTGGAGCCACCTCCAAAGAATGATTACTCCGAGGCCGAAAATGATCTTATATTTATGGAGTCTGCTGTCCATGATGCTTTAAGTCTCAAAAAGATACGTCAGAACTTTGCAAGGAATTTTCAGAACCTTGAATCAAGAGGAATAGTTCAAGCAGGAGAACATTTATTGGTTAGCAAAGTTGAAAACAAAGTTTTGAATGGTTCAGCAAGCAATCTTAAAGAAGGAAGAAATGCATCCACGCCTGAATTTATAAGAAGCCGATCTACCCCACGTGGAAAGTTTTTTGGTTTATCTTGA	2949	0.4005	MQGGSSNKVVDCILCLKGFYEWKLSGGVGVWRYGGTVRITSFPKKSPSSIVGSESADESLDESESSQYEQLLEFLQLSEEFLIEETRTANALAFLYDHFGLRLLQAYLREANGIEDLPLNAMVIDTLLSKVVKDFSSLLVSQGTQLGLFLKKILKGDMGCLSKREFIETISLYLSQRSSLASNDFSKFCNCGGKRDSYRQKANCSAKYSEVIDTQQKQLEGMKYFFEETKLEVKQIQSEWEEEFSRLEDHIKSLEVASTSYHKVLEENRLLYNQVQDLKGAIRVYCRVRPFLPGQSNGQSTVDYIGENGDMMIVNPLKHGKDSRRVFSFNKVFGTTVTQEQIYADTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTTEDTWGVNYRALGDLFHISKERSDSIKYEVFVQMIEIYNEQVRDLLVTDGSNRRLDIRNNSQMNGINVPDAFLVPVTCTQDVLDLMRIGQKNRAVGATALNERSSRSHSVLTVHVRGRELVSNSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKNPHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAFGETISTLKFAERVSSIELGAAQSNKETGEIRELKEEISNLKLALERKEAELDQWKAGNARNAIDSQKPRAVSPFQLPKYGTNGNTKHETGQRLMDDRSFESRSCSSGKQRRSRFPSTFMDKDSMPKMSFLTEEKLVSSGKGRSPSPPVRRSQSNDRGTSIKSKVKTETIDNQPILKHPFPAANKSLVTMPVVASTDNNTRMYVNSQEQVKHENISETIFNLQKLNYKKVHQENEEEQFKQALSAVRQGGIRKSKVESKAKAKHNQLSPFKIQKPDLTSPFIPEMEFTSESNVEPPPKNDYSEAENDLIFMESAVHDALSLKKIRQNFARNFQNLESRGIVQAGEHLLVSKVENKVLNGSASNLKEGRNASTPEFIRSRSTPRGKFFGLS*	983

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g0621	982	CDD	KISc_C_terminal	279	611	-	-
	Pvu6g0621	982	MobiDBLite	consensus disorder prediction	737	756	-	-
	Pvu6g0621	982	MobiDBLite	consensus disorder prediction	682	700	-	-
	Pvu6g0621	982	Gene3D	Kinesin motor domain	224	611	IPR036961	-
	Pvu6g0621	982	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	282	647	IPR027417	-
	Pvu6g0621	982	PANTHER	HEAVY CHAIN, PUTATIVE-RELATED	2	977	-	-
	Pvu6g0621	982	SMART	kinesin_4	279	617	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu6g0621	982	PANTHER	KINESIN-LIKE PROTEIN KLP-3	2	977	-	-
	Pvu6g0621	982	Coils	Coil	616	650	-	-
	Pvu6g0621	982	MobiDBLite	consensus disorder prediction	652	756	-	-
	Pvu6g0621	982	Coils	Coil	237	257	-	-
	Pvu6g0621	982	PRINTS	Kinesin heavy chain signature	356	377	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu6g0621	982	PRINTS	Kinesin heavy chain signature	479	496	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu6g0621	982	PRINTS	Kinesin heavy chain signature	510	528	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu6g0621	982	PRINTS	Kinesin heavy chain signature	559	580	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu6g0621	982	ProSiteProfiles	Kinesin motor domain profile.	281	609	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu6g0621	982	Pfam	Kinesin motor domain	287	609	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g0621	Pvu-Chr6	17627928	17634251	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu6g0621	272	609	Calmodulin-binding Proteins	AT5G65930	43.023	4.35e-76	271

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g0621	K10406		-	gmx:100793458	1707.19

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu6g0621	6	17627928	17634251	Pvu8g2907	8	58787402	58796821	PCT