Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0612 ATGATGGAACTAGTTAGCAGAAATGAAACAATACCAACTTATCAGTATTGGTTAAATGATGGATGTAATAGACATCATCAAAGGTTTCCTTATAGCAAGACATCCAAAACGAGTGTTGTTAAGACTTGTTTGAAATCATCAATTACATGTAAATATTGGAAAAATGGGAACTGCATGTATGGTGATCAGTGTCGAAATTTACATTCATGGTCTGTTTCAGAGAAAACTTCTATTGGCATGAAAAACACTGTGAAGGTACATGATTTACCTTGTTATTATGAAGAGAAAAATATAAGACCTTCAAGATTAATTTGGTGGAGACCACCTTTTGAAGGATTTGTCAAGATTAATTGTGATGGAGCATTTACAATGCACGGAAACAAAGCAGGCGCAGGAGGGGTTGTGAGAGATTGGAGAGGAAATTTTATCTTTGGTTTCTCTAGTGGTTTGGCAAATTGTTCAGTACTAACGGCTGAATTAGAGGCAATCAAGATTGGAATTGAAACAACAATCTCCAAGGGATACAAGAACTTGATGGTTGAAAGTGATTCTAAAGTTGCCGTCGATATCATTACTAGCTTGGTAGCCCAACAAAGCAATGACGATACAAGACAAAGTCAAGATGTTATCTCTTCAATTATGGAGATATGTAAGACGGCTAACATGATTTATTTGAATCATGTGTTCAGGGAGGTAAACGCAGCAGCTGATGGTCTTGCCAAACATGGGTTGTCATTGTGTCCCGAGCAAGGTGTTAAAGTTTTTGAAGATCCTCCCTATTTCATTGAGAGTCATTTGTATCTAGATAGAACTGGAAAAATATATCGTCGATGA 834 0.3669 MMELVSRNETIPTYQYWLNDGCNRHHQRFPYSKTSKTSVVKTCLKSSITCKYWKNGNCMYGDQCRNLHSWSVSEKTSIGMKNTVKVHDLPCYYEEKNIRPSRLIWWRPPFEGFVKINCDGAFTMHGNKAGAGGVVRDWRGNFIFGFSSGLANCSVLTAELEAIKIGIETTISKGYKNLMVESDSKVAVDIITSLVAQQSNDDTRQSQDVISSIMEICKTANMIYLNHVFREVNAAADGLAKHGLSLCPEQGVKVFEDPPYFIESHLYLDRTGKIYRR* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0612 277 Gene3D - 35 102 - -
Pvu6g0612 277 SUPERFAMILY CCCH zinc finger 47 69 IPR036855 GO:0046872
Pvu6g0612 277 Pfam Reverse transcriptase-like 117 242 IPR002156 GO:0003676|GO:0004523
Pvu6g0612 277 ProSiteProfiles RNase H type-1 domain profile. 110 245 IPR002156 GO:0003676|GO:0004523
Pvu6g0612 277 SUPERFAMILY Ribonuclease H-like 113 246 IPR012337 -
Pvu6g0612 277 Gene3D - 112 245 IPR036397 GO:0003676
Pvu6g0612 277 SMART c3hfinal6 45 70 IPR000571 GO:0046872
Pvu6g0612 277 CDD RNase_H_like 116 241 IPR044730 -
Pvu6g0612 277 ProSiteProfiles Zinc finger C3H1-type profile. 44 71 IPR000571 GO:0046872
Pvu6g0612 277 PANTHER OS05G0353850 PROTEIN 98 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0612 Pvu-Chr6 17522419 17523309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0612 106 194 Glycoside Hydrolase AT2G33160 38.043 1.08e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu6g0612 RVT_3 1.4e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0612 - - pvu:PHAVU_006G058500g 580.096