Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0605 ATGGAGCATGGAGGTTCCTTCTTTCACATTGATCAACAAGTGAAATCAAGTTCTGTGCCTTTGCAGCAAGAAAACAACTATGCAAACACAGAAATTGCAGCACCAGCAAACTCAAATGGAGGTCAAAACCCTAATTTGATTGGAAGAGATAAGAGCAAGATGCCAATTACAAATGTGACAAAAATCATGAGAAAGTTTCTTCCAAACAATGCAAAAGTCTCAGATGGGGCCAAAGAGATGATTCAACAAAGTGCTACAAACTACATTACCTTTGTAACCAAAAAAGCCAAGGAGAAATGCCTCAGTGAGTACAGAAAGATTATGAATGCAGATGACTTGTTATGGGCCATTCAAAATGTGGGCTTTGATGAATACATTGGGCCTCTTGGTACTTTCCTCCAACGTTGTCGCAACATTGAAGGAGGTACTCACGGGCCTACTTTTGGGCCTGGGCTTAACCCTATGGAGATGCCTCACCCTCCTTTGCCACCACCTCCTCCTCCACCACCACCACCACCACCTCCACCAGCAGCAGCAGTTTATTCATCTGGGTTGGATTTTTCCATGCACCAAAACACCAACCCTGAAATGTTTGACACAAATGATGTGGGTGGGTACCTAGAAGCTGTTGGTTGCTCAAGTAATGCTTTTATCAACTTTGATCCTTTCTCTCTCTTCCAACAGGATCAGCTGTGA 696 0.4353 MEHGGSFFHIDQQVKSSSVPLQQENNYANTEIAAPANSNGGQNPNLIGRDKSKMPITNVTKIMRKFLPNNAKVSDGAKEMIQQSATNYITFVTKKAKEKCLSEYRKIMNADDLLWAIQNVGFDEYIGPLGTFLQRCRNIEGGTHGPTFGPGLNPMEMPHPPLPPPPPPPPPPPPPPAAAVYSSGLDFSMHQNTNPEMFDTNDVGGYLEAVGCSSNAFINFDPFSLFQQDQL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0605 231 MobiDBLite consensus disorder prediction 153 178 - -
Pvu6g0605 231 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 53 117 IPR003958 -
Pvu6g0605 231 MobiDBLite consensus disorder prediction 143 178 - -
Pvu6g0605 231 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 24 151 - -
Pvu6g0605 231 Gene3D Histone, subunit A 45 145 IPR009072 GO:0046982
Pvu6g0605 231 MobiDBLite consensus disorder prediction 31 51 - -
Pvu6g0605 231 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 151 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu6g0605 231 SUPERFAMILY Histone-fold 53 147 IPR009072 GO:0046982
Pvu6g0605 231 MobiDBLite consensus disorder prediction 31 46 - -
Pvu6g0605 231 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Pvu6g0605 231 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Pvu6g0605 231 PRINTS CCAAT-binding transcription factor subunit A signature 119 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0605 Pvu-Chr6 17480147 17484332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0605 1 140 CCAAT-HAP3 Transcription Factor Family AT1G21970 41.333 3.90e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu6g0605 CBFD_NFYB_HMF 5.8e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0605 K08065 - sspl:121811691 114.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0605 6 17480147 17484332 Pvu8g2878 8 58598774 58599862 PCT