Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0600 ATGCAACATCTTGTGAATTGCTTATCCACACACAACACAAACATGGGAACCTACGTGGAAAGTTTGTCAGGTGTGGAGGAACATGTCTTTCGTAGCCAATACTCACCTGTCCCTATCCCTGACAATGTGACTTTGCCAGAATATGTGCTCCAAAATGCTGAATTGTATGGTGAGAAGGTTGCATTTGTGGATGCTGTAACTGGAAAAGGGGTGAGTTATAGAGAGGTGGTGAGGGATGTAGACAGGTTTTCAAAGGCCTTAAGATCTCTTGGTTTGAGGAAAGGGCATGTTGTGATTGTGGTACTTCCAAATGTGGTGGAGTATGCCATTGTTGCTTTGGGGATAATGGCTGCTGGTGGGGTGTTCTCAGGGGCAAATCCAAGTTCTCATGTCTCAGAAATTAAGAAACAGGCAGAGTCTGCTGATGCCAAATTAATTGTCACCAATAGCTCAAACTATGAAAAGGTGAAGGGTCTAGAGCTACCTGTTATTGTGCTAGGAGATGAAGTTGTTGAAGGTGGCATGAATTGGAATAAGTTGCTGGAAGCAGCAGATAGGGCAGGTGATGATTTTGCCAAGGAGCCTATTCATCAGAATGATCTTTGTGCCATGCCATTCTCATCAGGCACCACAGGAATGTCAAAGGGTGTGATGCTCACTCATAGAAATCTAGTGGCTAATCTCTGCTCTACACTCTTCACTGTGACTAAGGAAATGGAGGGCCTTGTCACCACACTAGGCTTGATTCCCTTCTTTCACATTTATGGCATCACTGGAATATGCTGTGCCACTCTTAGGAGCAAAGGGAAGGTTGTGGTTATGGGAAGGTTTGAGTTGAAAAAGTTTCTCAATGCCTTAATCACACATGAGGTCACATTTGCACCCATTGTGCCCCCTATCATTCTCAGTTTGGTGAAAAATCCCATAGTAGATGAATTTGACCTCAGCAAGCTAAAACTCCAGGCCATTATGACTGCAGCAGCACCACTTGCACCAGAACTTCTTAATGCTTTTGAACATAAGTTCCCTGGCGTTTCTGTCCAAGAGGCATATGGACTTACTGAGCACAGCTGCATCACACTCACTCTTGCACAAAAAGGATTGGGAAGTCTTCATAAAAATTCAGTGGGATTCGTCCTCCCAAATTTGGAAGTCAAGTTTGTTGATCCTGACACTGGTCGATCCCTTCCTAGGAACACACCTGGGGAACTTTGTGTGAGAAGCCAATGTGTGATGCAAGGTTACTATAAACAGGTGGATGAGACTGCCCAAACCATTGACAAAAATGGATGGCTTCACACAGGTGACATAGGATTCATAGATGATGAAGAAAATGTCTTTATCATTGATCGTATCAAGGAGTTGATTAAATACAAAGGCTTCCAAGTTGCTCCTGCAGAGTTAGAGGCCATTTTGCTGAGTCATTCATCAGTTGAAGATGCAGCTGTAGTGCCATTACCAGATGAAGAGGCAGGGGAAATTCCTGCTGCAAGTGTAGTTTTGAGCCCTGGTGCAAAGGAAAGTGAGGAGGACATCATGAACTATGTTGCCAACAATGCTGCACATTACAAGAAAGTGAGAGTGGTACACTTTGTGGAAACCATACCAAAGTCACCCTCTGGAAAAATAATGAGGAGGCTCATCAAAGAGAAGATGGTTGAAAAGATAAAGACAAGTTCCTTAATAAAATCTGAGAATGTCTAA 1704 0.4349 MQHLVNCLSTHNTNMGTYVESLSGVEEHVFRSQYSPVPIPDNVTLPEYVLQNAELYGEKVAFVDAVTGKGVSYREVVRDVDRFSKALRSLGLRKGHVVIVVLPNVVEYAIVALGIMAAGGVFSGANPSSHVSEIKKQAESADAKLIVTNSSNYEKVKGLELPVIVLGDEVVEGGMNWNKLLEAADRAGDDFAKEPIHQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFTVTKEMEGLVTTLGLIPFFHIYGITGICCATLRSKGKVVVMGRFELKKFLNALITHEVTFAPIVPPIILSLVKNPIVDEFDLSKLKLQAIMTAAAPLAPELLNAFEHKFPGVSVQEAYGLTEHSCITLTLAQKGLGSLHKNSVGFVLPNLEVKFVDPDTGRSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIIDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSPGAKESEEDIMNYVANNAAHYKKVRVVHFVETIPKSPSGKIMRRLIKEKMVEKIKTSSLIKSENV* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0600 567 ProSitePatterns Putative AMP-binding domain signature. 204 215 IPR020845 -
Pvu6g0600 567 Pfam AMP-binding enzyme 51 458 IPR000873 -
Pvu6g0600 567 Pfam AMP-binding enzyme C-terminal domain 467 542 IPR025110 -
Pvu6g0600 567 SUPERFAMILY Acetyl-CoA synthetase-like 33 555 - -
Pvu6g0600 567 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 25 555 - -
Pvu6g0600 567 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 25 555 - -
Pvu6g0600 567 Gene3D - 27 453 IPR042099 -
Pvu6g0600 567 Gene3D - 454 557 IPR045851 -
Pvu6g0600 567 CDD 4CL 39 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0600 Pvu-Chr6 17403293 17406728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0600 27 553 Monolignol Biosynthesis Gene Families AT1G62940 72.968 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0600 K01904 - gmx:100811418 1004.59