Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0598 ATGGACGAAGGCGATGGAGGGTACGGTGAGAGCGGCGATCCCATGGATCAGTTTCACCGTAACGAAGCTATATCCGCCGTGGCCGACGATGGTTTCATGGCAGAGGAAGATGACGATTATGAAGATCTTTACAACGACGTCAACGTAGGCGAAGGGTTCCTTCAATCTTTGCGCAAAAACGACGAGCCGGCCTTCCGAAACGATGGCGTCGAGGATCAGAAGCCCCCGCCGCCCCCGCCGGCTCCTGATGCCGCCGGGGTTTCGATTCCCACTGCCGGTGGCGGGGGGGAGGGTGTAGGAGGCGGTGAAAGTGAGGTTTTGGAATCTAGGGTTTCAGGGAGAGTTGATGGATTTCAGAATCAAGGGTTTAGAGGGAACGAGGTGGCTGCCAAAGGTGGGATTAGGGTTGAATTGGGGCATCAATCTATGAAATCTAGTGGAATTGAGGAACAGGGTGGTAATGACGGGGCTGCAGTTCCGGGGAATGTGCAGCAGCCACATGGTGGGGTTGTTGGGAGTGTGGGAAATGAGGGTTTAGCGAGACAAGGTCAAGGTGGGGGAGGAGGGGGGAGTGCTATTAGGGTTGGTGGAAATGGTGTTGGAAACAGTGTGGGCGCTGTTAATAGTGTTAGTACTGGAGGAGTTGGAGGTGCTGGTGGTGGTGGTGGTGTGGCTGCTTCCGGTGGTACTATATTGTTTGTCGGTGATTTGCATTGGTGGACTACTGATGCTGAGCTGGAAACTGAGCTTAGTAAGTATGGGCCTGTTAAGGAGGTGAAGTTTTTCGACGAGAAGGCTAGTGGGAAGTCTAAGGGGTATTGCCAAGTTGAGTTTTTTGACCCTTCTGCAGCAACAACTTGCAAGGAGGGAATGAATGGTCATGTTTTTAACGGGAGACCATGTGTTGTTGCGTTTGCATCTCCTTTTACAGTTAAGAAAATGGGGGAGGCTCAGATAAACAGGAATCAGCAGATGAACCCATCTGCTGTTACACAACAGGGAAGGAGGGGGCCTTCTGATTCGGGGGCTAAGCCTGGTGGAGCTAATATTTCTACAGGTGGTAATTACCAAGGAGGAGATGGGAATAGAGGTTATGGGAGAGGAGGTAACTGGGGAAGAGGGAACAATCCTGGTATGGGGAATAGGGGGCCTGTGAATCCAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTCATGGTGGAAATGGTTTTGGACAGGGAATTGGTGGTACCCCTCCACTGATGCATCCTCAGTCAATGATGAGTCAGGGTTTTGATCCTGCTTTTGGTGGTCCCATGGGTAGAATGGGTAGCTATGGAGGCTTTCCTGGGGGTCCAACCCCTCCATTTTCTGGGCTCTTACCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCTGCATTCTTTGGAAGAGGGATGCCAGTTAATGGTATGGGGATGATGCCGACATCAGGTATGGATGGTCCTAATATGGGAATGTGGTCAGATCCGAATATGGGTGGATGGGGTGGGGAAGAGCCTGGTGGTGGGAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCCGACCATCAGTATGGTGAAGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAGAAAGATAGAGGTTCCGAAAGGGACTGGTCTGGTTCTTCTGAGAGAAGGTATAGGGATGATAGAGATCAAGGATACGAGAGAGATGCTCCTAGAGAGAAAGAGATGGGCCATGATCCTGAGTGGTCTGAAAGAAGGCATCGAGATGATAGAGAAACTGTCCGAGAAAGGTCTCGTGATCGTGAACGGTCTCGCGACCGCGAAAGGGATCATCGGGAGCGTGACAGGCACAGGGAAGATAGGGACCGATATGCTGATCATCATAGGTACAGAGACCGGGAAGCAGAGCATGATGATGAGTGGGACAGGGGACGATCATCAAGGACTCACAGCAAACCTCGGATATCACAAGAGGAGGAACACCATTCAAGGCCAAGAGATGCTGATTATGGGAAGAGGCGACGGCTTACTTCTGAATAA 2076 0.5154 MDEGDGGYGESGDPMDQFHRNEAISAVADDGFMAEEDDDYEDLYNDVNVGEGFLQSLRKNDEPAFRNDGVEDQKPPPPPPAPDAAGVSIPTAGGGGEGVGGGESEVLESRVSGRVDGFQNQGFRGNEVAAKGGIRVELGHQSMKSSGIEEQGGNDGAAVPGNVQQPHGGVVGSVGNEGLARQGQGGGGGGSAIRVGGNGVGNSVGAVNSVSTGGVGGAGGGGGVAASGGTILFVGDLHWWTTDAELETELSKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATTCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVTQQGRRGPSDSGAKPGGANISTGGNYQGGDGNRGYGRGGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGHGGNGFGQGIGGTPPLMHPQSMMSQGFDPAFGGPMGRMGSYGGFPGGPTPPFSGLLPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKEMGHDPEWSERRHRDDRETVRERSRDRERSRDRERDHRERDRHREDRDRYADHHRYRDREAEHDDEWDRGRSSRTHSKPRISQEEEHHSRPRDADYGKRRRLTSE* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0598 691 SUPERFAMILY RNA-binding domain, RBD 227 315 IPR035979 GO:0003676
Pvu6g0598 691 MobiDBLite consensus disorder prediction 320 338 - -
Pvu6g0598 691 MobiDBLite consensus disorder prediction 54 104 - -
Pvu6g0598 691 Gene3D - 225 370 IPR012677 -
Pvu6g0598 691 MobiDBLite consensus disorder prediction 499 691 - -
Pvu6g0598 691 MobiDBLite consensus disorder prediction 537 691 - -
Pvu6g0598 691 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 301 IPR000504 GO:0003723
Pvu6g0598 691 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 2 690 - -
Pvu6g0598 691 MobiDBLite consensus disorder prediction 320 423 - -
Pvu6g0598 691 CDD RRM_CFIm68_CFIm59 232 305 - -
Pvu6g0598 691 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 308 IPR000504 GO:0003723
Pvu6g0598 691 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 2 690 IPR034772 -
Pvu6g0598 691 SMART rrm1_1 231 304 IPR000504 GO:0003723
Pvu6g0598 691 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0598 Pvu-Chr6 17391562 17397111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0598 211 306 Eukaryotic Initiation Factors Gene Family AT4G34110 30.303 7.17e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0598 K14398 - gmx:100782869 891.723