Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0597 ATGGACGAAGGCGAGGGAGGGTACGGTGAGAGTGCCGATCCCATGGATCAGTTCCACCGTAACGAAGCTATATCCGCAGTTGCCGACGATGGTTTCTTGGCCGAGGAAGATGATGATTACGAGGATCTTTACAACGACGTCAACGTCGGCGAAGGCTTCCTTCAATCTTTGCGCAAAAATGACGATTCGGCAGTCGTTTCCCGAAACGACGATGTCGAGGACAAGAAACCGTCACCGCTGCCGCCTGTTCCAGATGCCGCTGGGGTTTCGATTCCGGGTGTCGGTGGCGGTGGAGAGGGAGTCGGTGTCGGTGGAAGCGGGGCTGTGGAATCTAGGGTTTCCGGGAGAGTTGACGGGTTTCAGAATCAAGGATTTAGAGGGAACGATATTGGTGCCAAAGGTGGGATTAGGGTTGAATTAGGGCACCAATCTGGTAAATCGAGTGAAATTGAGGAGCAGGGTGGTAATGATGGTGCTGCAGTGCAGGGGATTGGACAGCAACCACACGCTGGAGTTGTTGGAAGTGTGGGAAATGAGGGTATGGCGAGACAAGGTGGTGGTGGCGGTGGAGGAGGAGGAGGAGGAAATGCTATTAGGGTTGGTGGCAATGGTGTTGGGAACAGTGTGGGTGCTGTTAATAATGTTAGTACTGGAGGAGTTGGAGGTGGAGGTGGTGGTGGTTCTGGTTCTGGTGGTACTATATTGTTTGTTGGTGATTTGCATTGGTGGACCACTGATGCAGAACTGGAAACTGAGCTTAGTAAGTATGGACCTGTTAAGGAGGTGAAGTTTTTTGATGAGAAGGCTAGTGGGAAGTCTAAGGGGTATTGCCAAGTTGAGTTTTTTGACCCTTCTGCTGCAACAACTTGCAAGGAGGGAATGAATGGTCATGTTTTTAACGGTAGACCATGTGTTGTTGCGTTTGCATCTCCTTTTACAGTTAAGAAAATGGGGGAGGCTCAGATAAACAGGAATCAGCAGATGAACCCATCTGCTGTTACACAACAGGGAAGGAGGGGGCCTTCTGATTCGGGGGCTAAGCCTGGTGGGGCTAATATTTCTACAGGTGGTAATTACCAAGGAGGAGATGGGAATAGAGGTTATGGGAGAGGAGGTAACTGGGGAAGAGGGAACAATCCTGGTATAATGGGTCATGGTGGAAATGGTTTTGGACAGGGAATTGGTGGTACCCCTCCACTGATGCATCCTCAGTCAATGATGAGTCAGGGTTTTGATCCTGCTTTTGGTGGTCCCATGGGTAGAATGGGTAGCTATGGAGGCTTTCCTGGGGGTCCAACCCCTCCATTTTCTGGGATCTTACCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCTGCATTCTTTGGAAGAGGGATGCCAGTTAATGGTATGGGGATGATGCCGACATCAGGTATGGATGGTCCTAATATGGGAATGTGGTCAGATCCGAATATGGGTGGATGGGGTGGGGAAGAGCCTGGTGGTGGAAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCGTCCGACCATCAGTATGGTGAAGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAGAAAGATAGAGGTTCAGAAAGGGACTGGTCTGGTTCTTCCGAGAGAAGGTATAGGGATGATAGAGATCAAGGATACGAGAGAGATGCTCCTAGAGAGAAAGAGATGGGCCATGATCCTGAGTGGTCTGAAAGAAGGCATCGTGACGATAGAGAAACTGTCCGAGAACGGTCTCGTGATCGTGACAGGGAAAGATCTCGAGACCGTGATCGTGAACGTTCTCGAGATCGGGACCGAGACCGTGAAAGGGATCACCGTGAGCGTGACAGACACAGAGAAGATAGGGACAGATATGCAGATCATCATAGGTATAGAGATGGGGAAGCAGAGCATGATGATGAGTGGGAGAGGGGACGGTCGTCAAGGACACATAGCAAATCGCGGTTATCACAAGAGGAGGAACACCATTCTAGGCCGAGAGATGCTGATTATGGGAAGAGGAGACGGCTCACTTCTGAATAA 2064 0.5053 MDEGEGGYGESADPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSAVVSRNDDVEDKKPSPLPPVPDAAGVSIPGVGGGGEGVGVGGSGAVESRVSGRVDGFQNQGFRGNDIGAKGGIRVELGHQSGKSSEIEEQGGNDGAAVQGIGQQPHAGVVGSVGNEGMARQGGGGGGGGGGGNAIRVGGNGVGNSVGAVNNVSTGGVGGGGGGGSGSGGTILFVGDLHWWTTDAELETELSKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATTCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVTQQGRRGPSDSGAKPGGANISTGGNYQGGDGNRGYGRGGNWGRGNNPGIMGHGGNGFGQGIGGTPPLMHPQSMMSQGFDPAFGGPMGRMGSYGGFPGGPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKEMGHDPEWSERRHRDDRETVRERSRDRDRERSRDRDRERSRDRDRDRERDHRERDRHREDRDRYADHHRYRDGEAEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRLTSE* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0597 687 Gene3D - 227 392 IPR012677 -
Pvu6g0597 687 SMART rrm1_1 234 307 IPR000504 GO:0003723
Pvu6g0597 687 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 686 - -
Pvu6g0597 687 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Pvu6g0597 687 MobiDBLite consensus disorder prediction 55 86 - -
Pvu6g0597 687 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 304 IPR000504 GO:0003723
Pvu6g0597 687 CDD RRM_CFIm68_CFIm59 235 308 - -
Pvu6g0597 687 MobiDBLite consensus disorder prediction 481 687 - -
Pvu6g0597 687 MobiDBLite consensus disorder prediction 323 415 - -
Pvu6g0597 687 MobiDBLite consensus disorder prediction 143 194 - -
Pvu6g0597 687 MobiDBLite consensus disorder prediction 519 687 - -
Pvu6g0597 687 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 686 IPR034772 -
Pvu6g0597 687 SUPERFAMILY RNA-binding domain, RBD 230 318 IPR035979 GO:0003676
Pvu6g0597 687 MobiDBLite consensus disorder prediction 63 78 - -
Pvu6g0597 687 MobiDBLite consensus disorder prediction 1 22 - -
Pvu6g0597 687 MobiDBLite consensus disorder prediction 323 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0597 Pvu-Chr6 17387432 17389560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0597 222 431 Eukaryotic Initiation Factors Gene Family AT2G23350 28.774 1.14e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0597 K14398 - gmx:100782869 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0597 6 17387432 17389560 Pvu6g0597 6 17387432 17389560 ECH