Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0573 ATGGCGAAAATTCAAGATTTACTCCTAGGAAGAAACACAACAAACCGAAAGGTTGTGTTGTCGAAAAGGAGGTTGTTCGTGTTAAAGATCTTTCAAATGGTCGGAAGAGATGTTGGAAAGGTCTTCACTTATGCAAGTAAATGTGGAAATGTAGGAACATTTACTAATCATAGTTGTTCTTCAAATCTTCGTGTCAAAGATGTTATGCATGATCACAATGACAAGAATCTTCCTCACAAAATGTTGTTTGGTGTAAAGGATATTCTTGCTGGAAGAGAGCTGATTTATAAATATAATTCCTTGAATGGAAAATTGATTAAGAGTAGAAGTAGTAGTTGCTATTGGGGAACACCGCAAGGCAATGGACAGATCTACATTTAA 381 0.357 MAKIQDLLLGRNTTNRKVVLSKRRLFVLKIFQMVGRDVGKVFTYASKCGNVGTFTNHSCSSNLRVKDVMHDHNDKNLPHKMLFGVKDILAGRELIYKYNSLNGKLIKSRSSSCYWGTPQGNGQIYI* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0573 126 SUPERFAMILY SET domain 42 100 IPR046341 -
Pvu6g0573 126 Pfam SET domain 43 99 IPR001214 GO:0005515
Pvu6g0573 126 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 44 106 - -
Pvu6g0573 126 Gene3D SET domain 11 102 IPR046341 -
Pvu6g0573 126 PANTHER - 44 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0573 Pvu-Chr6 17078720 17079405 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0573 45 125 EF-hand Containing Proteins AT5G13960 34.118 1.28e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu6g0573 SET 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0573 - K11420 pvu:PHAVU_006G054800g 259.996