Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0563 ATGGCCAAGCTTTCCCCTCTTGAAGAGCCTCTTTTGGATGGTGACTCTAGAGCAATCAACAATTCTGATTCCAGTAAGACTAGAGGAAATGAAAATTCAACCCGATATTCAAATGCAGGATTTTTCAGTATGCTTACTTTCTCTTGGATCAGTCCGTTAATAGGTCTAGGAAATGAGAAGACTTTAAACCATGAGGACCTCCCACTTCTTGCAACTGATGACAGTGCTTATGGGATTTTTCCAACATTTAGAAACAAACTAGAGTCAGAGTGTGGTGTTCGAAATGTGACCACTCTTGGGCTGGTGAAGGTGTTATTCGTGTCAACTTGGCAAGGGATCTTTTTGTCAGGTTTGTTTGCATTCCTGTATGCATGTGCTTCCTTTGTTGGACCCTTTCTTATTGACATCCTTGTTCAATACCTCAATGGAGAATACATGTTTAAAAATGAAGGCTATGTTTTGGCAGCGACATTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCACAGAGGCACTTGATGTTTAGGTTCCAGCAGGTTGGGGTTAGGATGCAATCGATGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTTTCGTGTCAAGCAAAGGAGGTTTGTAGTACTGGGGAAATCATCAACTTAATGACTGTCGATGCAGAAAGAATTGGTGAATTTTGTTGGTACATGCATGATCCATGGATGTGTGTTTTGCAACTTGCTTTAGCCCTGTTAATTCTCTATAGAAGTGTAGGTGTTGCTTCAATAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGCTAAACCATCCTGTGGCATCATTGCAAGAAAAGTTCCAAAGCAAGATAATGGAGTTCAAAGATAAAAGAATGAAGGCTACATCTGAGATTCTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTGTCAAAGATTATTCAGCTTAGGAGAACTGAGGAGATATGGCTAAAGAAATTTCTAGCTGGAACAGCAACTATTAGATTTCTCTTCCATAATGCCCCAACGTTTATTGCAGTGGTTACTTTTGGTACTTGTGTTCTTATAGGCATTCCACTTGAATCAGGAAAGGTCTTATCTGCACTTGCAACATTCCGAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACAATTTCTATGATTGCACAAACTAAAATTTCTCTGGATAGGATTGCATCATTTCTTCGACTAGATGAGTTGCAGACTGATATTGTACAGAAGCTTCCATGGGGTAGTTCCGATAAGGCAATTGAATTAGTGGATGGAAACTTCTCATGGGATTTATCTTCCCCTAATCCAACATTGAGAAACATTAATCTCAATGTTTTTCATGGTATGAGAGTAGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATTATAGGGGAAGTACCAAAGATATCTGGGACATTGAAAATATGTGGAAGAAAGGCTTATGTTTCTCAATCGCCATGGATACAGAGTGGCAAGATAGAAGACAACATATTATTTGGTAAAGAGATGGACAGTGAGAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAGGACCTTGAGGTTCTACCATTTGGTGATCAGACCATTATTGGGGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCCCGTGCTCTATACCAAGATGCTGATATATATCTTTTTGATGATCCCTTCAGTGCCGTTGATGCTCATACAGGATCCCATCTCTTTAAGGAGTGCTTGCTTGGCCTTTTAAATTCAAAAACTGTGATATACGTAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTAATACTGGTTATGAGAGAAGGAAGGATAACTCAATCAGGAAAATATAATGACATTCTCAAGACAGGCACAGATTTTATGGAACTTGTAGGTGCACATAGAGCAGCTTTGTCTTCAATTAAGTCCTTAGAGAGAAGTCCAACATTTAAAACATCAAGTACCACCAAGGAGAAAACAAATTCATTAAGTGATTTTGAACTTGATCAAAATGTGGAAAACATATATGGTGAAAATGATAAGCCTAACGACACACTTGAGCCTAAAGGACAACTTGTTCAAGAAGAAGAACGAGAAAAGGGTAGAGTTGGGTTTAAAGTGTACTGGAAATACTTCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTTGCTCAGACACTCACTGTGAGTTTTCAGATTGCAAGCAATTACTGGATGACTGTTGCAACTCCTGTTTCAATAACTGCTGAACCTGATATTGGAAGCTTTACACTTATGGTTGTCTATGTGGCTTTGGCAATTGGAAGTTCCATTTTCACCTTCGCCAGATCATTTCTTGCTGTGATAGCTGGATACAAGACATCCACTGTGCTCTTTGATAAAATGCAGTTGTGTATTTTTCGAGCACCAGTATCATTTTTTGATGCCACCCCAAGTGGTCGAATCCTCAATAGAGCTTCAGTGGACCAAAGCACACTAGATATGTACATTGCCAATGTATTATGGGCAGTTACCTTAAATCTGGTTCAGCTCTTGGGAAATGTTGTTGTGATGTCTCAAGCTGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCTAGCATATGGTACCAGCGGTACTATTCTGCATCTGCTAGAGAATTGGCACGATTGGTTGGTACATGTCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAACAAGAACCAAGATTTAATGACATAAATATGAAGTTGATAGACAGATATTCCCAACCCAAACTATACAGTGCTACTGCAATTGAATGGCTGAGTTTCCGATTGGATATTTTATCCACTCTCATATTTGCCTTCTGTTTGGTATTCTTGATATCTTTCCCAAATTCAATGACTACTCCTGGCATTGCGGGATTGGCTGTGACATATGGACTTAATCTAAACTCTATACAGACTAAAATAATCTGGTTTCTTTGCAATTCGGAGAACAAAATTATATCTGTTGAAAGAATACTCCAGTACACATCCCTCCCAAGTGAAGCTCCTCTTGTGATTAAAGACAACCAACCTGATTCTTCTTGGCCATCATTTGGCGAGATTCATATCCAGGATTTACAGGTTCGATATGCTCCTCACTTGCCTATTGTTTTACGAGGTCTTACTTGCACTTTTACTGCTGGAGCAAAAACTGGTATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTAGTGCAAACACTTCTCCGACTTATTGAACCTATGGCTGGAAAAATATTAATAGATAACATTAACATATCTTTGATTGGAATTCATGATTTGCGGTCTAAACTCAGCATTATTCCTCAAGATCCAACAATGTTTGAAGGGACTGTAAGAACCAACCTGGATCCACTGGAAGAGTACACAGATGAACAGATCTGGGAGGCTCTAGATATGTGCCAACTAGGAGATGATGTAAGGAAAAAAGAAGGGAAGCTGGACTCCATAGTTACTGAGAATGGAGAAAATTGGAGTATAGGTCAAAGGCAATTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAGGCTACTGCATCAGTTGATACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCAACAGTTTTCAGAATGCACTGTCATTACCATTGCTCATAGGATAACTTCTATCATCGACAGTGACATGGTTCTGTTTTTAAATCAAGGGTTGATTGAGGAATATGATTCACCAAAGAAACTTCTTGAGAACAATTCTTCATCTCTAGCTCAACTAGTTGCAGAATACACAAAGAGGTCAAACTCTGGTTTTGGAAATTAA 3915 0.3939 MAKLSPLEEPLLDGDSRAINNSDSSKTRGNENSTRYSNAGFFSMLTFSWISPLIGLGNEKTLNHEDLPLLATDDSAYGIFPTFRNKLESECGVRNVTTLGLVKVLFVSTWQGIFLSGLFAFLYACASFVGPFLIDILVQYLNGEYMFKNEGYVLAATFVAAKLVECLSQRHLMFRFQQVGVRMQSMLVAMIYAKGLTLSCQAKEVCSTGEIINLMTVDAERIGEFCWYMHDPWMCVLQLALALLILYRSVGVASIAALAATVIVMLLNHPVASLQEKFQSKIMEFKDKRMKATSEILKNMRILKLQAWEMKFLSKIIQLRRTEEIWLKKFLAGTATIRFLFHNAPTFIAVVTFGTCVLIGIPLESGKVLSALATFRILQMPIYSLPDTISMIAQTKISLDRIASFLRLDELQTDIVQKLPWGSSDKAIELVDGNFSWDLSSPNPTLRNINLNVFHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGRKAYVSQSPWIQSGKIEDNILFGKEMDSEKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLNSKTVIYVTHQVEFLPDADLILVMREGRITQSGKYNDILKTGTDFMELVGAHRAALSSIKSLERSPTFKTSSTTKEKTNSLSDFELDQNVENIYGENDKPNDTLEPKGQLVQEEEREKGRVGFKVYWKYFTTAYGGALVPFILLAQTLTVSFQIASNYWMTVATPVSITAEPDIGSFTLMVVYVALAIGSSIFTFARSFLAVIAGYKTSTVLFDKMQLCIFRAPVSFFDATPSGRILNRASVDQSTLDMYIANVLWAVTLNLVQLLGNVVVMSQAAWQVFIVLIPVMAASIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQEPRFNDINMKLIDRYSQPKLYSATAIEWLSFRLDILSTLIFAFCLVFLISFPNSMTTPGIAGLAVTYGLNLNSIQTKIIWFLCNSENKIISVERILQYTSLPSEAPLVIKDNQPDSSWPSFGEIHIQDLQVRYAPHLPIVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLLRLIEPMAGKILIDNINISLIGIHDLRSKLSIIPQDPTMFEGTVRTNLDPLEEYTDEQIWEALDMCQLGDDVRKKEGKLDSIVTENGENWSIGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQQFSECTVITIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLENNSSSLAQLVAEYTKRSNSGFGN* 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0563 1304 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 1304 - -
Pvu6g0563 1304 Pfam ABC transporter transmembrane region 113 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu6g0563 1304 Pfam ABC transporter transmembrane region 741 984 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu6g0563 1304 ProSitePatterns ABC transporters family signature. 553 567 IPR017871 GO:0005524
Pvu6g0563 1304 Gene3D - 1041 1294 IPR027417 -
Pvu6g0563 1304 SMART AAA_5 455 628 IPR003593 -
Pvu6g0563 1304 SMART AAA_5 1084 1269 IPR003593 -
Pvu6g0563 1304 CDD ABCC_MRP_domain2 1056 1276 - -
Pvu6g0563 1304 SUPERFAMILY ABC transporter transmembrane region 739 1040 IPR036640 GO:0005524|GO:0016021
Pvu6g0563 1304 MobiDBLite consensus disorder prediction 17 32 - -
Pvu6g0563 1304 Gene3D - 410 672 IPR027417 -
Pvu6g0563 1304 CDD ABCC_MRP_domain1 428 628 - -
Pvu6g0563 1304 CDD ABC_6TM_ABCC_D2 739 1033 IPR044726 GO:0140359
Pvu6g0563 1304 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 114 394 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu6g0563 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 650 IPR027417 -
Pvu6g0563 1304 SUPERFAMILY ABC transporter transmembrane region 110 407 IPR036640 GO:0005524|GO:0016021
Pvu6g0563 1304 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 741 1021 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu6g0563 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1050 1284 IPR027417 -
Pvu6g0563 1304 Gene3D ABC transporter type 1, transmembrane domain 703 1039 IPR036640 GO:0005524|GO:0016021
Pvu6g0563 1304 Gene3D ABC transporter type 1, transmembrane domain 95 409 IPR036640 GO:0005524|GO:0016021
Pvu6g0563 1304 MobiDBLite consensus disorder prediction 1 32 - -
Pvu6g0563 1304 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1304 - -
Pvu6g0563 1304 CDD ABC_6TM_ABCC_D1 115 402 IPR044746 GO:0140359
Pvu6g0563 1304 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 428 651 IPR003439 GO:0005524
Pvu6g0563 1304 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1058 1292 IPR003439 GO:0005524
Pvu6g0563 1304 Pfam ABC transporter 1076 1223 IPR003439 GO:0005524
Pvu6g0563 1304 Pfam ABC transporter 446 580 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0563 Pvu-Chr6 16931519 16937464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0563 428 644 Calmodulin-binding Proteins AT2G36910 32.189 3.31e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0563 - K05666 gmx:106794105 2236.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2850 8 58486204 58489949 Pvu6g0563 6 16931519 16937464 PCT