Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0562 ATGAACCTTGCTGATTGGGATCAAGAACTGAAAAAGTATCAGGATGTGATAGCTTCAGGTACCAAGAATATGAAAATAAAGGCCATAATGATGCTGGCTCGTATTTCTAAGCATGCCCCTGAACCTGTTTTAGCTCGCACCATACCCATTCTCACTGAGATTCTTGGTCACAATGTTTTAAATGACTCTGCACCTTCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGATGGTGCGTTGGCAGTTGAAATTGGTGGACATGGTGCTCCTCATTCTTTGATGAGGTTGTTGCCTCACTCTGATGGAAGGATGCAGAAGATCCTGATAAAATGTTTGCTGGTTATTGTTAGTTTTTGCAATGCAAGTAGGACAGTTGTTGCCACCAATGGTGGGGTGGAAGTGATAATTGGTTTGTTGAGTTCTTGCACCAATGATACTAGGAGGTATTTGTTGGAGATTTTGAGTGTGTTAGCATTGAGGAGGGATGTTAGGAAGGCTCTCACTAGACTAAGAGCTCTTCACTATGTTGTGGAGGCTGCTAGTTTTGGGAGCATAGTGTCCAGGGAAAGGGCTTGCCAAGCAATTGGTTTGCTTGGAGTCACTAGACAGACTCGGCGTGTGCTTGTTGAATTGGGAGCAATTCCAGTTCTTGTGTCGTTGTTTCGTGTTGGAGAACACTCTACAAAGCTTGTTGCTGGTAATTCTCTTGGTGTGATATCTGCTCATGTGGATTACATTAGGCCAGTTGCTCAAGCTGGGGCTATCCCCCTTTATGCTGAGCTTCTTGAAGGACCTGATCCTTCTGGGAAAGAGATAGCTGAGGATGTTTTTTGTATATTGGCTGTTGCTGAGGCAAATGCTGTTGAAATTGCTGGTCATTTGGTAAGGATTCTTAGAGAAGGTAATGATGAGGCAAAGGCTTCTGCGGCCGATGTGATGTGGGATCTGTCGGGCTACAAGCATTCAATGTCTGTAGTCAGGGATTCAGGTGCAATTCCTATTCTTGTTGAGCTTTTGGAGAGTGGGAGTGAAGATGTGAAGGTGAACGTTTCTGGGGCATTTGCTCAACTGAGCTATGATGGAACTGATAGAATGTCACTTGCTGAGGCAGGGGCTATTCCAATTCTCATTGACTTGATGAATGATGTTGATGAGGTTGAGGAACTAAGGGATAATGCTACAGAGACTCTTGTCAATTTTTATGAAGATCCATTGTATCATGATAGAGTGTCCAATGCAATTAATGTTTCTTCATTCAGAAATATGCAGAATAGGTTGGTTCATATTCGTGCATCGAATGAGCACATGGCTAGATCCTTGAGAAGAATGAGCGTTGAGCAGCTCACATGGAACCCAGATGTTGTATAA 1386 0.4365 MNLADWDQELKKYQDVIASGTKNMKIKAIMMLARISKHAPEPVLARTIPILTEILGHNVLNDSAPSLQEAAAYCLKCIACRGDGALAVEIGGHGAPHSLMRLLPHSDGRMQKILIKCLLVIVSFCNASRTVVATNGGVEVIIGLLSSCTNDTRRYLLEILSVLALRRDVRKALTRLRALHYVVEAASFGSIVSRERACQAIGLLGVTRQTRRVLVELGAIPVLVSLFRVGEHSTKLVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILREGNDEAKASAADVMWDLSGYKHSMSVVRDSGAIPILVELLESGSEDVKVNVSGAFAQLSYDGTDRMSLAEAGAIPILIDLMNDVDEVEELRDNATETLVNFYEDPLYHDRVSNAINVSSFRNMQNRLVHIRASNEHMARSLRRMSVEQLTWNPDVV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0562 461 Gene3D - 208 298 IPR011989 -
Pvu6g0562 461 Gene3D - 7 207 IPR011989 -
Pvu6g0562 461 SUPERFAMILY ARM repeat 48 408 IPR016024 -
Pvu6g0562 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
Pvu6g0562 461 SMART arm_5 325 365 IPR000225 GO:0005515
Pvu6g0562 461 SMART arm_5 36 80 IPR000225 GO:0005515
Pvu6g0562 461 SMART arm_5 366 408 IPR000225 GO:0005515
Pvu6g0562 461 SMART arm_5 125 165 IPR000225 GO:0005515
Pvu6g0562 461 SMART arm_5 207 247 IPR000225 GO:0005515
Pvu6g0562 461 SMART arm_5 248 288 IPR000225 GO:0005515
Pvu6g0562 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 4 458 - -
Pvu6g0562 461 Gene3D - 299 428 IPR011989 -
Pvu6g0562 461 Pfam Armadillo/beta-catenin-like repeat 331 364 IPR000225 GO:0005515
Pvu6g0562 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Pvu6g0562 461 Coils Coil 382 402 - -
Pvu6g0562 461 PANTHER U BOX DOMAIN-CONTAINING 4 458 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0562 207 410 U-box Gene Family AT2G23140 28.910 1.72e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0562 - - gmx:100819735 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0562 6 16917446 16919543 Pvu6g0562 6 16917446 16919543 ECH