LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g0558	ATGGACGCCGGCGAAGCTCACTCCGACGATCCGAATCGACCTGGGTCGAGGCCCAATTCCACCGCCGAGCCTGCTCCGGCCGGCGGCGGCGGCGCGAGGTACAAGCTCATGTCCCCGGCGAAGCTCCCGATCTCACGCTCGCCGTGCGTCACGATTCCCCCGGGGCTCAGTCCGACGTCGTTTCTCGAGTCACCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACCACAGGATCCCTTTTTATGCTTCATCAATCAGCTCATGCTTCTGTGACTTCTGCTGCATCTGCTTCATTTCCTGTAACCAGTGCATGCTTCAATACCAATACAGTTGATGACCGAAAACCCAGCTTCTTTGAGTTTAAACCGCACAGTAGATCAAATATGGTTCCTGCAGACCCTGACAATCATGCAAGTGAAAAATGTACTCAAATAGATGGTCAAGGAAAAGGTCAACCTTTTGATTCATCATTAGTGAAAAGTGAGATAGCAGTCCCTTCAAATGAATTAAGTCTATCATCACCTGTTCAAATTGTTAGCTCAGGAGCTAATGCCCGTGTTGAAGGTGATTTGGATGAACTGAACCCTAGGAGCAACATAGCAACTGGGCTTCAAACATCACAAGTTGACAATAGAGGTAGTGGACTTTCTGTTGCACCTGAGCGAGTATCCGATGATGGATACAACTGGAGAAAGTATGGTCAGAAACATGTTAAAGGGAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAACTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCGAAACCCCAGCCAAACCGGCGTTACTCAACTGGAAGTATGATGACTATGCAAGAAGATAGATCTGATAAAGCATCTTTCCGAGATGACAAAGGATCCAACATATGTGGCCAGGTGTCTCACCCAGCTGAGCCTGACAGTACTCCCGAGCTATCGCCTGTTGCAACAAATGATGGTGATCCAGAGGGTACAGGATTTTTGTCAAATCGGAATAATGATGAGGTTGATGATGATGATCCCTTTTCAAAGCGAAGAAAAATGGAGCTTGCAAATGCTGACATTACGCCTGTAGTTAAGCCTATTAGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGAAATCCTAACCCTAGGAGTTATTACAAATGCACTAACACGGGGTGCCCCGTTAGAAAACATGTGGAGAGGGCATCTCATGATCCGAAGGCCGTGATAACCACATATGAGGGGAAGCACAATCATGATGTGCCAACTGCAAGGAATAATAGTTGCCATGACATTGCAGGACCAGCAAGTGCTGCTGGGGGACAGACAAGAATTAGGCCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGTATGGGAATTAGCCCTGTTTCGGAAAACACACCAAGCAGTCAAGGGAGAATGATGCTTTCTGAATTTGGTGACAGCCAAGCTCATACCAGCAACTCCAATTTCAAGTTTGTTCATACTTCGGGGCCGCCAGTGTACTTTGGTGTTCTAAATAACAACTCTAACCCATATGGCTCTAGAGAAAATCCAAGTGATAGTGCATCTTTAAACCATTCTGCATATCCCTGCCCTCAGAACGTGGGAAGAATACTAATGGGTCCTTAA	1746	0.4679	MDAGEAHSDDPNRPGSRPNSTAEPAPAGGGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLFMLHQSAHASVTSAASASFPVTSACFNTNTVDDRKPSFFEFKPHSRSNMVPADPDNHASEKCTQIDGQGKGQPFDSSLVKSEIAVPSNELSLSSPVQIVSSGANARVEGDLDELNPRSNIATGLQTSQVDNRGSGLSVAPERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSTGSMMTMQEDRSDKASFRDDKGSNICGQVSHPAEPDSTPELSPVATNDGDPEGTGFLSNRNNDEVDDDDPFSKRRKMELANADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSCHDIAGPASAAGGQTRIRPEESDTISLDLGMGISPVSENTPSSQGRMMLSEFGDSQAHTSNSNFKFVHTSGPPVYFGVLNNNSNPYGSRENPSDSASLNHSAYPCPQNVGRILMGP*	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g0558	581	Gene3D	WRKY domain	384	460	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g0558	581	Gene3D	WRKY domain	219	286	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g0558	581	MobiDBLite	consensus disorder prediction	124	157	-	-
	Pvu6g0558	581	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	18	561	IPR044810	GO:0003700
	Pvu6g0558	581	SUPERFAMILY	WRKY DNA-binding domain	391	459	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g0558	581	SUPERFAMILY	WRKY DNA-binding domain	223	285	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g0558	581	MobiDBLite	consensus disorder prediction	1	38	-	-
	Pvu6g0558	581	Pfam	WRKY DNA -binding domain	227	283	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g0558	581	Pfam	WRKY DNA -binding domain	400	456	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g0558	581	SMART	WRKY_cls	399	458	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g0558	581	SMART	WRKY_cls	226	284	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g0558	581	ProSiteProfiles	WRKY domain profile.	394	459	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g0558	581	MobiDBLite	consensus disorder prediction	288	302	-	-
	Pvu6g0558	581	MobiDBLite	consensus disorder prediction	143	157	-	-
	Pvu6g0558	581	ProSiteProfiles	WRKY domain profile.	221	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu6g0558	581	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	18	561	-	-
	Pvu6g0558	581	MobiDBLite	consensus disorder prediction	276	366	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g0558	Pvu-Chr6	16845731	16851077	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu6g0558	37	581	WRKY Transcription Factor Family	AT4G26640	57.297	0.0	543

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pvu6g0558		WRKY	1.7e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g0558	-		-	gmx:100781491	1001.12

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu6g0558	6	16845731	16851077	Pvu6g0558	6	16845731	16851077	ECH
	Pvu6g0558	6	16845731	16851077	Pvu8g2841	8	58435600	58441263	PCT