Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0555 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGGCTTAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGCGTAACAGGTCGTGCTCGCGGCTTTGGTTTTGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTAATCATGGATAAACACATAATTGATGGGCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCTCAATATAAATAGGCAGCAGCAGTCTGGCAGTGCACACGCATCTCCTGGTCCTGGACGCACCAAAAAAATCTTTGTTGGAGGTTTACCATCAACAATCACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTTATGTATGATCATAATACCCAGAGGCCAAGAGGTTTTGGCTTCATTACCTATGATTCTGAAGAAGCTGTGGATAGAGTTCTATATAAAACTTTTCATGAACTCAATGGTAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGTCCCAACCGAAGCCCGTTGATAGGATATAACTATGGTTTGAATAGGGCCAGTAGCTACCTAAACAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTGAGGATGGATGGTAGGTTTAGTCCTCTTACTGGTGGTAGAAGTGGATTTACTCCCTTTGGCAACACTGGTTATGGAATGGGAATGAATTTGGATTCAGGATTGAGCCCAACCTTTGGAGGGACTTCCAATTATGGGAGCAATCTAGGATATGGTCGACTATTGAATCCTTTCTACAATGGCAACTCTGGCAGATATACCACTCCTATAGGCTATAGTGGGGTCAATGGGAGAAGTGATTCTCTTATGAACTCACCTTCTCGTAATTTATGGGGAAATGGAGGCCTCAATAATGCCAGTAATCCTATCAGCCCCAGCCCTTTCCTAGGATCTGGAAGTGGAGCTTTTGGTGTTTCAATTGGAAATAGTGGCACAGGCTGGGGTCCATCCATTCCAGCCCAGGGTGGAGGTGCTGCTTCTGGTTATGGTACTGGGAATAATATTTATGAAGGTGGTGATAGCAGCTTTGGTCTAGGTGGGGCAGGGTATGGAAGAAACAACAGTTCAGGTGTGACTCCAGCCTCTACATTTAATGTGTCAACTGGTGGTTATGAAGGATCGTACGGGGACTTGTACCGTACTGGCAGTGGTTCAGTTTACAACGACGCTGCTTGGCGTTCTGCTGTCTCTGAGATTGATGGTTCTGGTTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAATTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCTAATAGAGGAATCGCTGCCTAG 1446 0.4433 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQLNINRQQQSGSAHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPNRSPLIGYNYGLNRASSYLNSYAQGYSMSPIGGYGVRMDGRFSPLTGGRSGFTPFGNTGYGMGMNLDSGLSPTFGGTSNYGSNLGYGRLLNPFYNGNSGRYTTPIGYSGVNGRSDSLMNSPSRNLWGNGGLNNASNPISPSPFLGSGSGAFGVSIGNSGTGWGPSIPAQGGGAASGYGTGNNIYEGGDSSFGLGGAGYGRNNSSGVTPASTFNVSTGGYEGSYGDLYRTGSGSVYNDAAWRSAVSEIDGSGSFGYGLGGIASDDPVKNSEGYIGNYNVTSRQPNRGIAA* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0555 481 Gene3D - 6 85 IPR012677 -
Pvu6g0555 481 MobiDBLite consensus disorder prediction 86 101 - -
Pvu6g0555 481 SMART rrm1_1 109 181 IPR000504 GO:0003723
Pvu6g0555 481 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pvu6g0555 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Pvu6g0555 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 481 - -
Pvu6g0555 481 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Pvu6g0555 481 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 481 - -
Pvu6g0555 481 MobiDBLite consensus disorder prediction 86 107 - -
Pvu6g0555 481 SUPERFAMILY RNA-binding domain, RBD 107 195 IPR035979 GO:0003676
Pvu6g0555 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pvu6g0555 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 168 IPR000504 GO:0003723
Pvu6g0555 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pvu6g0555 481 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pvu6g0555 481 CDD RRM2_DAZAP1 106 185 IPR034131 GO:0003723
Pvu6g0555 481 Gene3D - 86 196 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0555 Pvu-Chr6 16788046 16792363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0555 5 182 Eukaryotic Initiation Factors Gene Family AT2G23350 23.333 2.84e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0555 K14411 - gmx:100794390 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0555 6 16788046 16792363 Pvu6g0555 6 16788046 16792363 ECH
Pvu6g0555 6 16788046 16792363 Pvu8g2837 8 58401461 58405856 PCT