Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0550 CGTAAGGTTAAAGGTATTAAAAGCAAAAATAGTCAAGAGCCAAGATCAAGCACTTCTGGAGAAAATAAATGGAATTCATTGCACTACCATGTAGATGATCTGGAGACGCAAGAGGAGGTTGTTGGCCTTGTTGGACCTACAGCCAAATTGAGAGGTTGGTTGAAAGAGGGACAAGAAGAACGCACTGTGATTACGGTTGTGGGTATTCCAGGAGTTGGAAAAACCACTCTTGCCAAGCATGTTTTTGACAAGGTCCATGACGACTTTGTGTGCCATACAATGATCAGAGTCCATCGACGCTACACAGTAAAAGGACTGTTGATAAATATGATACTCAAACTTTGCAAAGAAAGAAAGGAGAATCCACCTTCTGAAATTTCTAATATGGATGAAGACTCCTTGAAAAAAGAAGTCAGAGATCGCTTGCGCAAGAAGAGGTATGTTGTCTTATTTGATGACGTATGGAATGAAAATTTTTGGGATGACATTCAATCTGTTTTGATTGATGATAAAAATAAAAGTAGGATAATAATCACAACAAGAAACGTGAAAGTTGCAGACTTTTGTAAGACTTCTTCTATTGTTCAAGTATATAACCATGATAAACCTCTAAGTGAAGAAGAATCTTTGAAATTGCTCCACAAGAAGGCACGTTATGGTTCTGAAGGACATTGTCACGATGAACTTAAAAATGTGTCTCTTGAAATTCTTAGGAAGTGTAAAGGTTTACCTCTAGCAATTGTGGTCGTTGGTGGTCTTTTGAGTCAACTAAAGGACGAAAGTGCCTCTGAATGGAGAAAGTTTTGTGAAAACTTCAAGAGGAATCGTAACTTAAACGGTATAAGAGAAGTTATAGGTTGGAGTTATGATGATTTGCCAATCAATCTCAGATCATGTTTATTGTATTTCGGAATGTATCCGGAAGGCTATGAAATTAAATCTGATAGATTGGTTAGGCAGTGGGTAGCTGAGAGATTTGTTACACCTGATACCCCGAAATCTTTAGAAGAAGTTGCAAATGAATATTTATTAGGGTTGGTCCAGAGAAATTTGGTGCAAGTGTCTTCAATTAGCTTTGAAGATAAATTTATAAAATGTCGTGTTCATGATTTAATACACGACATGATCCGTGCAAAAGTCAAGAATACTTGTTTTGGCGAGTATATTGGTGGTGGTGGGGATGATCAATCTGAGTCAAGTGGGTTGGTTCGACGTCTGACAATTGCAACCAATGATGTAATTAGAAGTACTGAAACCTCACTCATTCGGTCAATTATAATCATTCCAGAAAAACAAGAAGAATCATGGTTTGTCGAATTTGAAAGCAAGATTCTTAAAAATTATATGCCATTGAAGGTACTTGATTACGAAGATTCTGGATTACCTTGTGTTCCTAAAATGTTAGGAACTTTAATCCACCCGAGGTATTTAAGCTTTAGGGGAACACTGATAGAAAGTCTTCCAAAATCCATTGGTAAGCTCCTGAACTTGGAAACCTTGGATATACGAGACACAAAAGTGTGTAAGATTCCAAAGGAGATCACCAAGCTCCGAAAGTTACGGTATCTTCTGACACCTGACCGTGCTTCTTCTTCAATTAAATGGAA 1607 0.3752 RKVKGIKSKNSQEPRSSTSGENKWNSLHYHVDDLETQEEVVGLVGPTAKLRGWLKEGQEERTVITVVGIPGVGKTTLAKHVFDKVHDDFVCHTMIRVHRRYTVKGLLINMILKLCKERKENPPSEISNMDEDSLKKEVRDRLRKKRYVVLFDDVWNENFWDDIQSVLIDDKNKSRIIITTRNVKVADFCKTSSIVQVYNHDKPLSEEESLKLLHKKARYGSEGHCHDELKNVSLEILRKCKGLPLAIVVVGGLLSQLKDESASEWRKFCENFKRNRNLNGIREVIGWSYDDLPINLRSCLLYFGMYPEGYEIKSDRLVRQWVAERFVTPDTPKSLEEVANEYLLGLVQRNLVQVSSISFEDKFIKCRVHDLIHDMIRAKVKNTCFGEYIGGGGDDQSESSGLVRRLTIATNDVIRSTETSLIRSIIIIPEKQEESWFVEFESKILKNYMPLKVLDYEDSGLPCVPKMLGTLIHPRYLSFRGTLIESLPKSIGKLLNLETLDIRDTKVCKIPKEITKLRKLRYLLTPDRASSSIKW 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0550 535 SUPERFAMILY L domain-like 367 526 - -
Pvu6g0550 535 Pfam NB-ARC domain 49 290 IPR002182 GO:0043531
Pvu6g0550 535 Gene3D - 22 197 IPR027417 -
Pvu6g0550 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 303 IPR027417 -
Pvu6g0550 535 Gene3D - 203 293 IPR042197 -
Pvu6g0550 535 MobiDBLite consensus disorder prediction 1 24 - -
Pvu6g0550 535 PRINTS Disease resistance protein signature 63 78 - -
Pvu6g0550 535 PRINTS Disease resistance protein signature 141 155 - -
Pvu6g0550 535 PRINTS Disease resistance protein signature 240 254 - -
Pvu6g0550 535 PRINTS Disease resistance protein signature 492 508 - -
Pvu6g0550 535 PANTHER - 31 525 - -
Pvu6g0550 535 Gene3D - 295 379 IPR036388 -
Pvu6g0550 535 Gene3D Ribonuclease Inhibitor 430 527 IPR032675 -
Pvu6g0550 535 PANTHER DISEASE RESISTANCE PROTEIN RP 31 525 IPR044974 GO:0006952
Pvu6g0550 535 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0550 Pvu-Chr6 16733974 16735582 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0550 64 251 WRKY Transcription Factor Family AT5G45050 31.579 1.82e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0550 K13457 - gmx:100786451 556.984