Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0545 ATGGCTAAGCTTTCCCCTCTTGAAGAGACCCTTCTAAATGGTGACTCCAGTGCAAGCAAAAACTCTGATCCCATTAAGACAAGAGAAAATGAAAATTTAACTAGAAATTCAAATCCTGGGTTTTTCAGTATTCTCAGTTTCTCGTGGATCAGCCCATTAATAAAAATAGGCAATGAGAGGACTTTGAACCATGAGGACATCCCACTTCTTGGTAGTGATGACAGTGCCAATGGGATTTTTCAAACTTTTAGAAGCAAACTCGAGTCAGAGTGTGGTAGTGTTAGGAATGTGACCACTCTTAAGCTGGCAAAGGTATTATTCTTGTCGACATGGCAACGGATCCTTTTATCAGGGTTATTTGCATTCTTGTATACGTGTGCTTCATATGTTGGACCCTTTCTTATTGATATCCTTGTTCAATACCTCAACGGGGAATACATGTTTAGAAATGAAGGATATATTTTGGCTGCGGCATTTGTTGCTGCTAAGCTTTTGGAGAGTCTTTCAGATAGGCACTCCATGTTTAGGATCCAGCAGGTTGGGGTTCAAATTCAAGCAAAGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTTTCGTGTCAATCAAAGGAGGTTCATAGCACTGGGGAAGTCATCAACTTAATGTCTGTTGATGCTGCAAGGATTGGAGAATTTTGTTGGTATATTCATCGACCCTGGATGTGTGTTTTGCAAGTTTCTCTGGCCTTGTTAATTCTCTATAGAAGCGTAGGGGTTGCTTCAATAGCTGCTCTTGCTGCCACTGTAATTGTAATGTTGATAAACCATCCTGTGTCATCATGGCAAGAAAAGTTTCAAAGCAAGATAATGGAGTTCAAAGATAAAAGAATGAAGGCTACATCTGAGACTCTTAAGAATATGAGGATTCTAAAATTGCAAGCATGGGAGATGAAGTTCTTGTCAAAGATTATTCAGCTTAGGAGAGCTGAGGAGATATGGCTAAAGAAATTTCTAGCTGGAACAGCAATTACTAGATTTCTCTTCCATAATGCCCCAACGTTTATTGCAGTGGTTACTTTTGGTACTTGTGTTCTTATAGGCATCCCACTTGAATCAGGAAAGGTCTTATCTGCACTTGCAACATTCCGAATTCTTCAAATACCCATCTACAGTCTTCCTGACACAATTTCTTTGATTGCACAAAGTAAAGTTTCTCTGGATAGGATTGTATCATTTATTCGACTAGATGAGTTGCAGACTGATATTGTACAGAAGCTTCCATGGGGTAGTTCCGATAAGGCAATTGAATTAGTGGATGGAAACTTCTCATGGGATTTATCTTCCCCTAATCCAACATTGAAAAACATTAATCTCAATGTTTATCATGGTATGAGAGTAGCTGTATGTGGCACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATTATAGGGGAAGTACCAAAGATATCTGGGACATTGAAAATATGTGGAAGAAAGGCTTATGTTTCTCAATCGCCATGGATACAGAGTGGCAAGATAGAAGACAACATATTATTTGGTAAAGAGATGGACAGTGAGAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAGGACCTTGAGGTTCTACCATTTGGTGATCAGACCATTATTGGGGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCGCGTGCTCTGTACCAAGATGCTGATATATATCTGTTTGATGATCCATTCAGTGCGGTGGATGCTCATACGGGATCTCATCTCTTTAAGGAGTGCTTGCTTGACCTTTTAAAATCCAAAACTGTGATATACATAACTCATCAAGTAGAATTCTTACCTGATGCTGATCTAATTCTGGTCATGAGAGAAGGAAGAATAACTCAGTCAGGAAAATTCAATGATATTCTCAGTTCAGGGACTGATTTTATGGAACTTGTAGATGCACACAGAGCAGCTTTATCTTCATCAATTAAGTCCCTAGAGAGAAGACCAACATTTAAACAAACAAGTACCACCGAGGAGAACAAAAATTCATTAACTGATTTTGAATATGAGCAGAATGAGGAAAAAATATATGATGAAAATAATAATAAAGATGACACAAATGAATTAAAAGGACAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTTGGGTTTAATGTATACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTACCCTTCATATTACTTCCTCAGACACTCACTGTGGGTTTTCAGATTGCAAGCAATTACTGGATGACTGTGGCAACTCCTGTTTCAACAACTGCTGAACCTGATATTGGAAGCTTTACACTTATGGTTGTCTATGTCGCTTTGGCTATTGGAAGTTCAATTTCAACCCTTGCCAGAGCATTTATTGCTGTGATAGCTGGATACAAGACAGCAACAGTGCTCTTCGGTAAAATGCATTTGTGTGTTTTTCGAGCACCGATATCTTTTTTTGATGCCACCCCAAGTGGTCGAATCCTGAATAGAGCTTCAACAGACCAAAGTGAACTAGATATGAACATTCCAGCCTTCGTATGGGCAATTACACTCAATTTGATTCAACTCTTGGGAAATATTGTTGTGATTTCTCAAGCAGTATGGCAGGTGTTTATAGTATTGGTTCCTGTAATGGCAGCATGCATATGGTACCAGCGATACTATTCTGCATCTGCAAGGGAACTGGCAAGATTAGTTGGTACATGTCAAGCTCCAGTTATACAACATTTTTCTGAAACTATTTCAGGATCAACAACCATAAAATGTTTTGAGCAAGAATCAAGATTTAATGACATAAATATGAAACTGATAGACAGATATTCCCAACCTAAATTATACAGTGCTGTTTCAATTGAATGGTTGAATTTCAGATTGGATATTTTATCCACTCTCACATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAACTCATTTACTACTCCTGGCATTGCTGGACTGGCGGTGACATATGGACTTAATCTAAACTCTCTACAATCTAATATAATCTGGTTTATTTGCAATGTGGAGAACAAAATTATATCTGTTGAAAGAATACTCCAGTACACATCCCTCCCAAGCGAAGCTCCTCTTGTGATTAAAGACAACCAACCTGATTCTTCTTGGCCATCATTTGGCGAGATTCATATCCGGGATTTACAGGTTCAATATGCTCCTCACTTGCCTATTGTTTTACGAGGTCTTACTTGCACTTTTACTGCTGGAGCAAAAACTGGTATCGTGGGAAGAACAGGAAGTGGAAAAACAACTCTGGTGCAAACACTTTTTCGACTTATTGAACCTGTTGCTGGAAAAATATTGATAGATAGCATTAACATCACTTTGATTGGAATTCATGATTTGCGGTCTAAAGTCAGCATTATTCCTCAAGATCCAACAATGTTTGAAGGGACGGTAAGAACCAACCTGGATCCTCTGGAAGAGTACACAGATGAACAGATCTGGAAGGCTTTAGAGATGTGCCAACTTGGAGATGAAGTAAGGAAAAAAGAAGGGAAGCTTGACTCCATAGTAACTGAAAATGGAGAAAATTGGAGCATGGGTCAAAGGCAATTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAGGCTACTGCATCAGTTGATACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCATCATTTTGCGGAATGCACAGTCCTTACTATTGCTCATAGGATAACTTCAATCATCGATAGTGACATGGTTCTGTTTTTAAATCAAGGATTGATTGAGGAATATGATTCACCAAAGAAACTGCTTAAGAACAAATCTTCCTCTCTAGCTCTACTGGTTGAAGAATACACAAGGAGATCAGACTCTGGTTTTGGAAATTAA 3921 0.3887 MAKLSPLEETLLNGDSSASKNSDPIKTRENENLTRNSNPGFFSILSFSWISPLIKIGNERTLNHEDIPLLGSDDSANGIFQTFRSKLESECGSVRNVTTLKLAKVLFLSTWQRILLSGLFAFLYTCASYVGPFLIDILVQYLNGEYMFRNEGYILAAAFVAAKLLESLSDRHSMFRIQQVGVQIQAKLVAMIYAKGLTLSCQSKEVHSTGEVINLMSVDAARIGEFCWYIHRPWMCVLQVSLALLILYRSVGVASIAALAATVIVMLINHPVSSWQEKFQSKIMEFKDKRMKATSETLKNMRILKLQAWEMKFLSKIIQLRRAEEIWLKKFLAGTAITRFLFHNAPTFIAVVTFGTCVLIGIPLESGKVLSALATFRILQIPIYSLPDTISLIAQSKVSLDRIVSFIRLDELQTDIVQKLPWGSSDKAIELVDGNFSWDLSSPNPTLKNINLNVYHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGRKAYVSQSPWIQSGKIEDNILFGKEMDSEKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLDLLKSKTVIYITHQVEFLPDADLILVMREGRITQSGKFNDILSSGTDFMELVDAHRAALSSSIKSLERRPTFKQTSTTEENKNSLTDFEYEQNEEKIYDENNNKDDTNELKGQLVQEEEREKGRVGFNVYWKYITTAYGGALVPFILLPQTLTVGFQIASNYWMTVATPVSTTAEPDIGSFTLMVVYVALAIGSSISTLARAFIAVIAGYKTATVLFGKMHLCVFRAPISFFDATPSGRILNRASTDQSELDMNIPAFVWAITLNLIQLLGNIVVISQAVWQVFIVLVPVMAACIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIKCFEQESRFNDINMKLIDRYSQPKLYSAVSIEWLNFRLDILSTLTFAFCLVFLISFPNSFTTPGIAGLAVTYGLNLNSLQSNIIWFICNVENKIISVERILQYTSLPSEAPLVIKDNQPDSSWPSFGEIHIRDLQVQYAPHLPIVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQTLFRLIEPVAGKILIDSINITLIGIHDLRSKVSIIPQDPTMFEGTVRTNLDPLEEYTDEQIWKALEMCQLGDEVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKHHFAECTVLTIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLALLVEEYTRRSDSGFGN* 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0545 1306 CDD ABCC_MRP_domain1 429 629 - -
Pvu6g0545 1306 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Pvu6g0545 1306 SUPERFAMILY ABC transporter transmembrane region 743 1042 IPR036640 GO:0005524|GO:0016021
Pvu6g0545 1306 SUPERFAMILY ABC transporter transmembrane region 110 408 IPR036640 GO:0005524|GO:0016021
Pvu6g0545 1306 Gene3D ABC transporter type 1, transmembrane domain 704 1041 IPR036640 GO:0005524|GO:0016021
Pvu6g0545 1306 Gene3D ABC transporter type 1, transmembrane domain 88 410 IPR036640 GO:0005524|GO:0016021
Pvu6g0545 1306 Pfam ABC transporter 1078 1225 IPR003439 GO:0005524
Pvu6g0545 1306 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Pvu6g0545 1306 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1062 1294 IPR003439 GO:0005524
Pvu6g0545 1306 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1306 - -
Pvu6g0545 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1052 1286 IPR027417 -
Pvu6g0545 1306 Gene3D - 1043 1294 IPR027417 -
Pvu6g0545 1306 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 750 1023 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu6g0545 1306 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524
Pvu6g0545 1306 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Pvu6g0545 1306 Gene3D - 411 674 IPR027417 -
Pvu6g0545 1306 CDD ABCC_MRP_domain2 1058 1278 - -
Pvu6g0545 1306 Pfam ABC transporter transmembrane region 115 380 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu6g0545 1306 Pfam ABC transporter transmembrane region 743 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu6g0545 1306 MobiDBLite consensus disorder prediction 1 32 - -
Pvu6g0545 1306 CDD ABC_6TM_ABCC_D2 741 1035 IPR044726 GO:0140359
Pvu6g0545 1306 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu6g0545 1306 SMART AAA_5 456 629 IPR003593 -
Pvu6g0545 1306 SMART AAA_5 1086 1271 IPR003593 -
Pvu6g0545 1306 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 1306 - -
Pvu6g0545 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 651 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0545 Pvu-Chr6 16665657 16671472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0545 429 676 Calmodulin-binding Proteins AT2G36910 30.224 3.68e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0545 - K05666 gmx:106794105 2199.48