Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0538 ATGGCAGAAACTGCAGTGTCCTTCGCTAATCAGCATGTGCTTCCAAAATTGTTTGAAGCTATGAAAATGCTGAGAGATCTCCCAAAAGAAGTTGCAGACCTTACTGATGAACTTGATGCCTTTCAAGATTTCATCAAAGATGCAGATAAACTGGCTGAAGATGAAGAAGATACCAGTAGGCGGGAGAGAATCAAAAGAAGGGTGATGCAACTGAGAGAAGCAACTTTTCTCATGGAAGATGTCATCGATGAATATGTGATCTGTGAGGAAAAGCAACCTGAAGATGATCCTCGATGTGCAGCTTTACTCTGTGAGGGTGTTGGGTACATCAAAACTCTCATACTTCGCCTTCAAATAGCGTATAAGATTCAGGATGTTAAATCACTTGCTCATGCTGAAAGAGATGGTTTTCAAAACAAATTTCCTTTAGAACGAAAACCAAACCGTTCAAGAGGAAATCAAAATATCACCTGGCACCAACTTCGAATGGATCCTCTCTCTGTCAAGGAAGATGATGTTGTGGGCCTTGATGGCCCTAGGCATATATTGAAAAATTGGTTGACAAATGGACGAGAAGAACGCACTGTAGTCTCTGTTGTAGGAATTCCAGGGGTGGGAAAAACCACTCTAGCAAAGCAAGCTTTTGACAAGGTCCATAACGACTTTGAGTGTCATGCATTGATCACAGTGTCTCAATCCTATAAAGTAGAAATCTTGCTACAGGATATGTTGAAGGAGCTTTGCGGTGAGAAAAAGGAGGTTCTTCCTCAAAATTTTGCTGCAATGGATCGAAGGTCGTTGATAAAAGAAGTTCGGAAGCACTTGCAGAATAGGAGGTATGTTGTCTTGTTCGACGACGTGTGGAATAAAAAATTTTGGGATGACATTGAATCTGCTATGATTGATGATAAGAATAAAAGCAGAATATTAATCACAACCAGGTACGAAAATGTTGCTTACTTTTGTAAGAAATCTTCTTTTATTGAAGTGCATAAGCTTGAAGAACCTTTAAGTGAAGAAGAATCTTTGAGATTGCTATGTAAGAAGGCATTTTATGGTTCTAACGGAGGTTGTCCAGAAGAACTTAAAGATATATCTCTTGAAATTGTTAGAAAGTGTAAAGGTTTACCTCTAGCAATTGTGGCCATCGGTGGTCTATTATCTCAAAAAGTTCAAACTGCAGCTAAATGGGCAAAATTTAGTAAAAATCTAAGTTTAAAGTTGGAAAGTAACTCTGAGTTAAGTAGTATAACAAAAATTTTAAGTTTAAGTTACAATGACTTGCCCTACAATCTCAGATTATGCTTACTGTATTTTGGAATGTATCCAGAAGACTATGAAGTTAAATCTGGTAAATTGATTCGGCAGTGGATTGCTGAAGGGTTTATCAAACAGGAAAGAGGAAAAACTTTGGAAGAAGTTGCACAAAAACATTTAAAGGAGTTGATTACTAGAAGTTTGGTGCAAGTATCTTCATTTTCCATAGATGGAAAAGCTAGAGGGTGTCGTGTTCATGACTCAATACATGAAATGATCAGTGGAAAAATGAAGGATACAGGGTTTTGTCAGTATATGGGTGAGAATAATATGTCAATGTCTGGTGGAATCATTAGACGCTTAACAATAGAAACCGATTGTGATGATTTAATTGTTGAAGGATCACACATTCGGTCAATTCTATTTTTCTCATATGTAGAATGTTTTGAAAGTTGCGTTGGTGGAATACTTGCAAAATACATGCCATTGAAGGTACTTGATTTTGAAGAAGTTATGATAGATGATGTTCCTGAAATTTTGGGGAATCTAATCCACTTGAAATATCTGAGCTTCAGGAATTCATGGATAAAAAGTCTTCCAAAATCCATTGGTAAGCTCCAAAACTTGGAGACCTTGGATGTACGAGAAACAGAAGTGTATGACATGCCAGAGGAGATTTGCAATCTCAGAAAGCTACGTCATCTTATGGCTGACGAAATATCTTCCACTTCAGTGAAGGATACTATTGGAAGCATGGCATCCTTACAAAAGATACTGTTTCTGGAAATTGATGACGATGGAGTGGTGATTAGAGAGCTAGGAAAGCTAAAACAATTAAGGGATATGAGGATTACTAATTTTAAGGGAGAACACAGTGATACTCTATGTTCCTCAGTCAATGAGATGCAGTTCTTGAAGACACTGCATATATATGTAGAAGATGATGATGAAGTTATTGATTTGCACTTTAAGTCATCTCTGAATGCACTTAGGAAGCTTTACCTATGTGGAACGTTAAAAGTGTTACCAAATTGGATTCCACAACTTCAAAATCTTGTGAAACTGTCTTTGGTGTACTCTCATTTAACTAATGATCCATTGGAATCAATAAAGGATATGCCAAATTTGTTGTTCCTCTCTATCAAATCCCATGCTTATGAAGGTGAAGCCTTGCATTTTCAAAAGGGAGGGTTTCAGACACTAAAGGAACTACGGCTCAAATGTTTGCAAAACTTGACTTCCATATGTTTTGATAGAGGAGCATTGCATTCTTTGGAAAAACTTCGTTTAAAGGAAATCCCCAAACTCAAGAGGGTACCCTCTGGCATTCAACACTTAGAGAAACTTGAAGTTCTCACTGTCTGGAAGATGCCAACTGAATTTGAACAAAGCATTGTTCCCAATGGAGGAAGAGAACATTGGATGATCCAACATGTGCCGCATGTTATTCTCCAGAATATTACTATTTCGCCAGAGTGTGCCACAGAGCATTTTGCCAATGTGGTCAGGGAGTGA 2772 0.3781 MAETAVSFANQHVLPKLFEAMKMLRDLPKEVADLTDELDAFQDFIKDADKLAEDEEDTSRRERIKRRVMQLREATFLMEDVIDEYVICEEKQPEDDPRCAALLCEGVGYIKTLILRLQIAYKIQDVKSLAHAERDGFQNKFPLERKPNRSRGNQNITWHQLRMDPLSVKEDDVVGLDGPRHILKNWLTNGREERTVVSVVGIPGVGKTTLAKQAFDKVHNDFECHALITVSQSYKVEILLQDMLKELCGEKKEVLPQNFAAMDRRSLIKEVRKHLQNRRYVVLFDDVWNKKFWDDIESAMIDDKNKSRILITTRYENVAYFCKKSSFIEVHKLEEPLSEEESLRLLCKKAFYGSNGGCPEELKDISLEIVRKCKGLPLAIVAIGGLLSQKVQTAAKWAKFSKNLSLKLESNSELSSITKILSLSYNDLPYNLRLCLLYFGMYPEDYEVKSGKLIRQWIAEGFIKQERGKTLEEVAQKHLKELITRSLVQVSSFSIDGKARGCRVHDSIHEMISGKMKDTGFCQYMGENNMSMSGGIIRRLTIETDCDDLIVEGSHIRSILFFSYVECFESCVGGILAKYMPLKVLDFEEVMIDDVPEILGNLIHLKYLSFRNSWIKSLPKSIGKLQNLETLDVRETEVYDMPEEICNLRKLRHLMADEISSTSVKDTIGSMASLQKILFLEIDDDGVVIRELGKLKQLRDMRITNFKGEHSDTLCSSVNEMQFLKTLHIYVEDDDEVIDLHFKSSLNALRKLYLCGTLKVLPNWIPQLQNLVKLSLVYSHLTNDPLESIKDMPNLLFLSIKSHAYEGEALHFQKGGFQTLKELRLKCLQNLTSICFDRGALHSLEKLRLKEIPKLKRVPSGIQHLEKLEVLTVWKMPTEFEQSIVPNGGREHWMIQHVPHVILQNITISPECATEHFANVVRE* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0538 923 PANTHER - 28 882 - -
Pvu6g0538 923 Pfam Rx N-terminal domain 5 93 IPR041118 -
Pvu6g0538 923 SUPERFAMILY L domain-like 503 887 - -
Pvu6g0538 923 Pfam NB-ARC domain 183 427 IPR002182 GO:0043531
Pvu6g0538 923 Gene3D - 425 515 IPR036388 -
Pvu6g0538 923 Gene3D - 159 331 IPR027417 -
Pvu6g0538 923 PANTHER DISEASE RESISTANCE PROTEIN RP 28 882 IPR044974 GO:0006952
Pvu6g0538 923 Gene3D - 336 424 IPR042197 -
Pvu6g0538 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 439 IPR027417 -
Pvu6g0538 923 CDD RX-CC_like 2 128 IPR038005 -
Pvu6g0538 923 Gene3D - 4 120 - -
Pvu6g0538 923 PRINTS Disease resistance protein signature 196 211 - -
Pvu6g0538 923 PRINTS Disease resistance protein signature 274 288 - -
Pvu6g0538 923 PRINTS Disease resistance protein signature 373 387 - -
Pvu6g0538 923 PRINTS Disease resistance protein signature 623 639 - -
Pvu6g0538 923 Gene3D Ribonuclease Inhibitor 558 890 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0538 Pvu-Chr6 16620560 16623631 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0538 197 384 WRKY Transcription Factor Family AT5G45050 27.895 9.22e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0538 K13457 - gmx:121174068 1103.58