Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0524 ATGGTGCCACTGAGTTGGATCTCTGACGAAGCCAGGAATTTGGCTCATGAACATGCACAAGTGGTGCCAATTTCACTTTTTGTGGCTGTTCTCTGCCTTTGTTTGGTCATTGGTTACTTGCTTGAAGAAAATCGATGGGTTAATGAATCCATAGTTGCCATTATAGTAGGAATCTTTGCTGGAATTATGCTGTTATTGATCACCAAAGGAAAGAGTTCTCACATCCTTACATTTAGTGAAGAACTATTCTTCATATATCTCCTTCCTCCCATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACAATTCTTCCATAACTTTTTAACCATCATGATGTTTGGTGTCATCGGTGTTTTCATTTCAACTCTTGTAATTACTTGTGGTAGCTGGTGGATATTCCCCAAGTTGAAGTTGCTTGGCCTGACTGGACAAGATTTTCTTGCTATAGGAACAATTTTCTCATCAACGGACACAGTTTGTACTCTGCAGGTTCTCCATCAAGATGAGACTCCTTTACTATACAGCCTAGTCTTTGGGGAAGGAGTGGTAAATGATGCCACATCAGTTGTTCTCTTCAATGCAGTGCAAAAGCTTGATGTTTCAAAATTTAGCAGCAAGACATTCCGAGTTATTGGAGATTTCTTGTATTTATTCTTGTTAAGCACTGGTCTTGGAGTTCTATCTGGCCTCCTCACATCATATATCTTAAAAGCCTTAAGCTTTGGAAGACATTCAAGTGTTCGTGAAATTGCATTGATGATGTTAATGGCATACCTATCCTACATGTTGGCAGAGCTATGTGATCTGAGTGGAATCCTCACCGTTTTCTTTTGTGGAATACTCATGTCACACTATGCATGGTATAATGTGACTGAAACTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCATTTATTGCAGAAACCTTCATATTTCTATATGTGGGCATGGATGCCCTTGACATTGAGAAGTGGAAGATGACTCAATTAAGTTATGGAAATTTGCTGGGGATATACAGTTCCTTAATACTATTGATATTGCTTGGGCGGGCTGCATTTGTTTTCCCTCTCTCTGCTGTTGCCAATTATACGAACACACGTGCTAGTTCTGACCGAGCATCACGCATCACTTTCAGACATCAGATAATCATTTGGTGGGCCGGGCTAATGAGGGGAGCTGTCTCCATTGCTCTGGCTTTCAAACAGTTCACATTTTCTGGAGTTACTTCTGATCCAGTTAAAGCAACAATGATTACCAACACCATTATTGTTGTCCTTTTTAGCACACTGGTTTTTGGTTTTCTCACAAAACCATTAATCAGATATCTCCTACCCCACACTGCTACAAGGAAAAACATCAACCATGAAGAATCAGGCCCACAAATTGAGGACTTGAATCTACCTTTGCTGTCCCTTGAGGAGTCCGCAGCCACCAACATCAGCCGCGCAAAGGAAAGTTTGTCCATGTTAATAGAAAGTCCTGTGTTCACCATACATCACTTTTGGAGGAGGTTCGATGATGCCTATATGAGACCTTTTTTTGGGGGACCTCATCATAACGAGTCACAGTGCTAG 1584 0.4078 MVPLSWISDEARNLAHEHAQVVPISLFVAVLCLCLVIGYLLEENRWVNESIVAIIVGIFAGIMLLLITKGKSSHILTFSEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISTLVITCGSWWIFPKLKLLGLTGQDFLAIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSKFSSKTFRVIGDFLYLFLLSTGLGVLSGLLTSYILKALSFGRHSSVREIALMMLMAYLSYMLAELCDLSGILTVFFCGILMSHYAWYNVTETSRITTRHVFATMSFIAETFIFLYVGMDALDIEKWKMTQLSYGNLLGIYSSLILLILLGRAAFVFPLSAVANYTNTRASSDRASRITFRHQIIIWWAGLMRGAVSIALAFKQFTFSGVTSDPVKATMITNTIIVVLFSTLVFGFLTKPLIRYLLPHTATRKNINHEESGPQIEDLNLPLLSLEESAATNISRAKESLSMLIESPVFTIHHFWRRFDDAYMRPFFGGPHHNESQC* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0524 527 Gene3D - 23 452 IPR038770 -
Pvu6g0524 527 PRINTS Na+/H+ exchanger signature 82 93 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Pvu6g0524 527 PRINTS Na+/H+ exchanger signature 96 110 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Pvu6g0524 527 PRINTS Na+/H+ exchanger signature 111 119 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Pvu6g0524 527 PRINTS Na+/H+ exchanger signature 151 161 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Pvu6g0524 527 PANTHER SODIUM/HYDROGEN EXCHANGER 11 524 - -
Pvu6g0524 527 Pfam Sodium/hydrogen exchanger family 30 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Pvu6g0524 527 PANTHER SODIUM/HYDROGEN EXCHANGER 11 524 IPR018422 GO:0006812|GO:0015299|GO:0016021
Pvu6g0524 527 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 22 462 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0524 Pvu-Chr6 16466946 16472088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0524 12 527 Antiporters AT5G55470 70.058 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0524 - - gmx:100813332 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0524 6 16466946 16472088 Pvu6g0524 6 16466946 16472088 ECH