Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0520 ATGGCATCTTCAGATGATGAGGGAGAGGATCAGCTGCTATCTGTATCAAATTACTATTTTGAAGATGACAAAGATGTGCCGGTGTGTTTTTCTGTGTTGCCAATTCGGTGGAGTGAGTCAGAGAGTCCAGTTGGCAAGAAAATGCAGGTGTTTTTGCGTGGTTTTGCAGATAATGGGCTGCAGAAAGTTTTTGTGCAAGTTGTTGCGTGGAGGTTTGATCTTTCTTGTGTGAGGCCTGAGATATCGGTATTGTCAAAGGATGGGAGATGGATTAAGCTTGAGAAGCCTAGGAAGAGCTATGAGGAAACGATAAGAACTATTTTGATCACCATTCACTTCATGAGTTATGCGAAAAGGAATCCCGACTCACCTGCCAAGTCTGCGTGGGATAACTTGAGTAAGAATAAGGAGTTTAGATCTTATGAGGTTTTGCCCTCGCAAAATGATATATTAAATCATATGACTTTAATGGGTGAAGCTGCCAAAAGAGATGCTGGCTTAGCAAAGTCCAAGCTTTTCCTCATGGTTCGGGAAGATAAAGATAGGCTGAAGATTAAGAAACTTTCTGATGAGGAAGTTAAAGATTTAGCACGACCTGGATTTATAACTGATGATACTGACAATGATTTGATTGATGAAATTGGTGAAGATTCAGATGGAGAGGATGGGTTGTTTGATTCTGTTTGTGCAATTTGTGACAATGGAGGTGAACTTTTGTGTTGTGATGGAAAATGCATGAGGTCATTTCATGCTAACGAGGAGGATGGTGAAGAATCTGCTTGTGCCTCTCTTGGTTTTAGTCAGAAGGAAGTTGATGATATCCAGAATTTCTACTGTAAGAATTGTGAATATAATCAACATCAGTGCTTTGCATGTGGTACTCTAGGCTGTTCTGATAAGTTTTCTGGTGCTGAGGTCTTCAAATGTGCGTCTGCAACCTGTGGCTTTTTTTATCATCCACAATGTGTTGCAAAGTTACTTCACCGGGTAGTTGAGGAGGCTCCAGATCCCAAGGAACTTGAGAGAAATATTGCTGAAGGAGGAGCTTTTACTTGTCCTACTCATTATTGTTGTGTCTGTAAAGGAATGGAAGACAAAAATGAACATGATTTTCATTTTGCTGTTTGTAGGCGTTGCCCCAAGTCCTACCATCGCAAATGCTTGCCAAGAAAGATCTCATTTGATGACATAGAGGATGAAGATATTGTAACAAGGGCTTGGGAAGACCTTCTACCCAACAATCGCATTCTTATATATTGTTTAAAACACGAGATTGATGATGAACTTGGAACTCCTATAAGGGATCATATAAAGTTTCCCAATGTAAAAGCTACTGTTCGAGAAGTTAATACTGAGGATAATGCAAAGCCTGCAAATAAAGAGAGGGTTATATTGAACAAGAACAATATTGTCTCAGAAAGTTTAATTGGCAAAAAAGCTGCTGCGAAATTTTCTAAACTATCTGGTAAAATGTCTTCTGGAAAAGTGGGTGACAAGAAGTCTGAAAAGATTTTTGGATCAAATATCTCAAGGAAGAAAACAAACGAGGCATCAAGAAGGAGTTTGAATGAAAGTAAGAGGCCATTAATCCCAAAAGAAACCAGAAAGTCGGAGGGTGCAGAAAATAAGTCCTCATTGGGTGCAAAATTATTTGCTCTTTGGAATAATGGTTCTGAGCAAATGAATTCTGGTAATAGGGTTGATAATGTAGCTAATAATTCCCGGCCTGTTAAGCCTACTAAAAAGCTGAGTAGTGCATTACCCTCATTAGATGAAGATTCAGAGAGGAGATTGGTTGCTATGTTTAAAGAAGCTACTTCATCAGTTACTTTGGAGGATGTTGTAAAAGAGCACAAATTTTCAACTACTCATACTCACTCATTGAAAAATGTTGTGGAGAAAACCATTACATTGGGGAAATTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAGGATGCTAGAGGGTGGGCACAATATTCGGGATGCTGCAGCTGTTTGTGGTCCTGATGTTCTTAACCAAATATTTAAGTGGAAGGATAAACTGAAAGTATATCTTGCACCTGTTCTATATGGTAATCGCTACACATCATTTGGCCGCCATTTTACACAAGCTGAAAAGCTGTCAGGGATTGTTGATAAACTGCATTCGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGCGGTGCTAATGACTTTAGCACTCTTATGAAGAAAAAACTTGAAGAGACTGGGAAGAGATGCTCATACAAAAACTTTGATCTACTTCCAACGAAG 2286 0.3933 MASSDDEGEDQLLSVSNYYFEDDKDVPVCFSVLPIRWSESESPVGKKMQVFLRGFADNGLQKVFVQVVAWRFDLSCVRPEISVLSKDGRWIKLEKPRKSYEETIRTILITIHFMSYAKRNPDSPAKSAWDNLSKNKEFRSYEVLPSQNDILNHMTLMGEAAKRDAGLAKSKLFLMVREDKDRLKIKKLSDEEVKDLARPGFITDDTDNDLIDEIGEDSDGEDGLFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSQKEVDDIQNFYCKNCEYNQHQCFACGTLGCSDKFSGAEVFKCASATCGFFYHPQCVAKLLHRVVEEAPDPKELERNIAEGGAFTCPTHYCCVCKGMEDKNEHDFHFAVCRRCPKSYHRKCLPRKISFDDIEDEDIVTRAWEDLLPNNRILIYCLKHEIDDELGTPIRDHIKFPNVKATVREVNTEDNAKPANKERVILNKNNIVSESLIGKKAAAKFSKLSGKMSSGKVGDKKSEKIFGSNISRKKTNEASRRSLNESKRPLIPKETRKSEGAENKSSLGAKLFALWNNGSEQMNSGNRVDNVANNSRPVKPTKKLSSALPSLDEDSERRLVAMFKEATSSVTLEDVVKEHKFSTTHTHSLKNVVEKTITLGKLEGSVEAVRTALRMLEGGHNIRDAAAVCGPDVLNQIFKWKDKLKVYLAPVLYGNRYTSFGRHFTQAEKLSGIVDKLHSYVQNGDTIVDFCCGANDFSTLMKKKLEETGKRCSYKNFDLLPTK 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0520 762 MobiDBLite consensus disorder prediction 488 542 - -
Pvu6g0520 762 MobiDBLite consensus disorder prediction 562 580 - -
Pvu6g0520 762 CDD PHD2_NSD 288 355 - -
Pvu6g0520 762 MobiDBLite consensus disorder prediction 562 586 - -
Pvu6g0520 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 378 IPR013083 -
Pvu6g0520 762 SMART PHD_3 288 356 IPR001965 -
Pvu6g0520 762 SMART PHD_3 357 424 IPR001965 -
Pvu6g0520 762 SMART PHD_3 228 283 IPR001965 -
Pvu6g0520 762 Pfam Cytosine specific DNA methyltransferase replication foci domain 11 132 IPR022702 -
Pvu6g0520 762 MobiDBLite consensus disorder prediction 493 542 - -
Pvu6g0520 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 285 IPR013083 -
Pvu6g0520 762 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 762 - -
Pvu6g0520 762 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0520 Pvu-Chr6 16439313 16451560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0520 226 329 PHD Transcription Factor Family AT3G14980 31.731 2.72e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0520 - - pvu:PHAVU_006G0498000 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0520 6 16439313 16451560 Pvu6g0520 6 16439313 16451560 ECH