Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0500 ATGGGAAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACAAACCTTGAGCTTCTCGCGGTTCATGAGGAGCTTGTCCAGGCAATTAAGGATGCAGAAGAAGGACTTTTTCACCTAAAACGTGCACGATTGTTACAGGAAGCGGATGCAATTCTGCATAACACTAATATTTTTGCTGAAGACGAGAAAGTGGAATTCCTTGATCCCACAGATGTTGAACCAGAGCTGTTGGAGGAAAAATGTCATTCTGTTGGATCTAAATGTAGATTTCGGCACATAAATGGGCGCTGGTACAATGGTCAAGTGGTGCAGCTGGATAATTCAGTGGCCAAAGTTTCATTCCTTACTCCTACGTCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAGCTGTCGCCTATCACATGGAGTTGATGTTCAGTTGTCTGCTCTTAAGAAATTTGTCCCTACAATCTGGGAGCAGTCCCTTGTCGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTGGGATGAAAAGGCTGAAGTTGGACAAGTTGTTTTCCGAGATGACGGTAGTACTGTGAAACTTGGTGCAGAAGATATGGCACTGTCTGAGCATGCAGAAGTGAGTGACTCAGAGAGTGATTCCAGCTTACAGCAATCTGAGTCCAGTGACTGTGAGGAGGATGAGGAATCACAGGGTTTAGGATTTCTGGACTGTACCAACCTACAGAGAGGAGTTCAAACTGAAACTGCAAAATTTGCCACTTGGGAAAACCACACTAGAGGCATAGCTTCCAGAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACGGGTCAGGGAATGCTGGACCCCATACCAGTGAAGATCCTACCACCAAAGCAATCCTTGGATTATGCACTTGAGTCTCATAAAAGGGAAGAGAAACCAGACAAGGAATGCAAGAAGAAGCGGAGCCGAGGTGGGAAGAGAAAACGTGAGAAGAAATTTGCAGAAGCAAATCGTGCAGCAAAAGAGGAAGAGGAGTCGGCATCAGATGTCTTTGCATTGATAAACAATCAGCTGACAATGCACAGTGAGGCTTTTGGCGGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTCCCGAGGAAGGTAAAAAGGTGGATAGACGGGCACTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCAATTTGTGAACGCCAATAAGAAAGAGAAGGCTGTGTATGAGGCTGCCATGAGAAAATTAAATAAAACCCGCGAAGCCTTGGCAGATGCCGAAGCAGTTCATGTCTCTGCCTCAAATGCAGTTGTTAGCAAAGAAAAAGAAAAGAGATGGCTCAAGTTTTAG 1491 0.452 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNLELLAVHEELVQAIKDAEEGLFHLKRARLLQEADAILHNTNIFAEDEKVEFLDPTDVEPELLEEKCHSVGSKCRFRHINGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSSCRLSHGVDVQLSALKKFVPTIWEQSLVGSSIWAVSTANAGTWREAELESWDEKAEVGQVVFRDDGSTVKLGAEDMALSEHAEVSDSESDSSLQQSESSDCEEDEESQGLGFLDCTNLQRGVQTETAKFATWENHTRGIASRMMANMGYREGMGLGVTGQGMLDPIPVKILPPKQSLDYALESHKREEKPDKECKKKRSRGGKRKREKKFAEANRAAKEEEESASDVFALINNQLTMHSEAFGGGSMKKQQSKGPEEGKKVDRRALVAYEEEVKDLKMRVEKLEQFVNANKKEKAVYEAAMRKLNKTREALADAEAVHVSASNAVVSKEKEKRWLKF* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0500 496 MobiDBLite consensus disorder prediction 238 267 - -
Pvu6g0500 496 ProSiteProfiles G-patch domain profile. 295 341 IPR000467 GO:0003676
Pvu6g0500 496 Coils Coil 362 382 - -
Pvu6g0500 496 Coils Coil 425 452 - -
Pvu6g0500 496 Pfam G-patch domain 295 338 IPR000467 GO:0003676
Pvu6g0500 496 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Pvu6g0500 496 MobiDBLite consensus disorder prediction 399 419 - -
Pvu6g0500 496 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Pvu6g0500 496 Gene3D - 119 178 - -
Pvu6g0500 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Pvu6g0500 496 Coils Coil 456 476 - -
Pvu6g0500 496 MobiDBLite consensus disorder prediction 341 382 - -
Pvu6g0500 496 SMART G-patch_5 293 339 IPR000467 GO:0003676
Pvu6g0500 496 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Pvu6g0500 496 MobiDBLite consensus disorder prediction 365 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0500 Pvu-Chr6 16181121 16187473 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu6g0500 G-patch 5.8e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0500 - - gmx:100796284 758.829