Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0499 ATGGGTGGTGGCGACGCCGGGGAGTCCGGTTCAAGGCCGGTGTTTTTCAAAGAACAGAAGTACCGCGGCGTCCGGAAGAGGCCGTGGGGCCGGTTCGCCGCCGAAATCAGAGACCCTTTGAAGAAAGCAAGAGTTTGGCTCGGAACCTTTGACTCTGCCGAGGATGCGGCGCGTGCGTACGACGCGGCGGCCAGAACCCTCCGGGGGCCCAAGGCAAAGACCAATTTCCCCCTCCCTCCGCCGTTCTACCAACCCGATCCGTTCACCGACCATCGGTATTTCGCCGGTTCCGGCGAGCCCTTTCACGATCACCGGCAACCCACCTCAAGCGGCATGAGCAGCACCGTCGAGTCCTTCAGCGGCCCACGCGCCACCGCCCCCAGGGCGACTCCGGTGACCGTCGCCCGGAGGTACCCTCGAACGCCGCCGGTAGTCCCCGAGGACTGCCGCAGCGACTGCGACTCTTCATCCTCCGTCGTGGAAGACGGCGACGGCGACAACGCCGCGTCGTCGTTTCGGCGAGAACCCTTGCCGTTTGATCTTAACGTGTTGCCGTTGGAGGATGCCGACGTTCCAAACGGTGGCATGGATAACGATATGTTCTGCACCGTTCTTTGTCTCTGA 624 0.6314 MGGGDAGESGSRPVFFKEQKYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPLPPPFYQPDPFTDHRYFAGSGEPFHDHRQPTSSGMSSTVESFSGPRATAPRATPVTVARRYPRTPPVVPEDCRSDCDSSSSVVEDGDGDNAASSFRREPLPFDLNVLPLEDADVPNGGMDNDMFCTVLCL* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0499 207 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Pvu6g0499 207 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Pvu6g0499 207 MobiDBLite consensus disorder prediction 103 121 - -
Pvu6g0499 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 185 - -
Pvu6g0499 207 MobiDBLite consensus disorder prediction 100 173 - -
Pvu6g0499 207 PANTHER ETHYLENE RESPONSE FACTOR 7 185 - -
Pvu6g0499 207 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Pvu6g0499 207 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Pvu6g0499 207 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Pvu6g0499 207 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Pvu6g0499 207 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Pvu6g0499 207 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0499 Pvu-Chr6 16171033 16172202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0499 17 207 AP2-EREBP Transcription Factor Family AT1G50640 59.420 1.58e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu6g0499 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0499 K09286 - gmx:100782025 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0499 6 16171033 16172202 Pvu6g0499 6 16171033 16172202 ECH
Pvu6g0499 6 16171033 16172202 Pvu8g2799 8 58092188 58093372 PCT