Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0470 ATGAATCACCAAAGATATCATGTTACAACCGAAAGTAGAAGGGGCCATAGCTATCGCCACAACCATAATCATGCACAGCCTGTGCAAGTGCAAGAGATCAGAGGTCACTCCAACTTTCATGCTCGTAGAGGCAACATGCATAGAGGTCAACAGATTGACAACGTTTCGTCAGAAGAAATTATTGCAAGACAAATGCTGACAAAAACTTATCTACTACCTAATAACTTGGAGGGGTCAACTTCTGATGAACAAGAAATTGATCTTTGTATAATATGTCAGGATGAATATAAAAACAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAGATTGTGTAAGGAGATGGTTACAAGAGAAAAATGTTTGTCCCCTGTGCAAATCAAAAGCATTGAGTATTGGATAG 414 0.3889 MNHQRYHVTTESRRGHSYRHNHNHAQPVQVQEIRGHSNFHARRGNMHRGQQIDNVSSEEIIARQMLTKTYLLPNNLEGSTSDEQEIDLCIICQDEYKNKEEIGILQCGHEYHADCVRRWLQEKNVCPLCKSKALSIG* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0470 137 SMART ring_2 89 129 IPR001841 -
Pvu6g0470 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 135 IPR013083 -
Pvu6g0470 137 ProSiteProfiles Zinc finger RING-type profile. 89 130 IPR001841 -
Pvu6g0470 137 SUPERFAMILY RING/U-box 88 133 - -
Pvu6g0470 137 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 57 134 IPR045191 GO:0061630
Pvu6g0470 137 PANTHER OS04G0185500 PROTEIN 57 134 - -
Pvu6g0470 137 Pfam Ring finger domain 88 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0470 Pvu-Chr6 15816784 15823469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0470 49 134 C3H Transcription Factor Family AT2G15530 41.573 1.87e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0470 K19041 - pvu:PHAVU_010G0831000 191.045