Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0464 ATGCCCTCTGCTCAGGATCCGTTTTACGTTGTCAAGTACGAGATTCAAGATTCGATTGATAAGCTGCAATCTACTTTTCATCAATGGCAAAACACTTCCAATGCTGCAGAACAGGGACGTCTTACGAAGGAGGTTCGTGCTGGATGCGAAAGCATAGAGTGGCAGGTGGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGATCCTTCTTGGTATGGAATTGATGAAGTTGAACTTGAAAGCCGAATGACATGGACAAGCAGTTCTCGATCTCAGGTTGTCACAATGAAGAAAGCATTGGAGGCTGGAAAGGGTTCAAGTACCACAAGCCACAGCAGTATGCGCCAAGAACTCATGAGGCTACCAAGTTCTCGTCAAAATGATACCTACAACCAGTATGCTGCCCGAGATAATGATGATTTCATACAATCAGAATCAGATAGACAAATGCTTCTTATAAAGAAACAGGATGAGGAATTAGATGACCTTAGTGAAAGTGTACGAAGAATTGGAGGTGTTGGACTTACAATTCATGATGAACTCACTGCACAGGACAAGATTCTTGAGGAACTTGGTTCTGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAAAAAAAGTGGGAATGGTTATGAAGAAGGCGAGTGCCAAGGGTCAGATCATGATGATATGTGGTTTGTTGGCCTTGTTCATCTTCCTATTTATCTTAGTATTCTTCACCTAG 732 0.4208 MPSAQDPFYVVKYEIQDSIDKLQSTFHQWQNTSNAAEQGRLTKEVRAGCESIEWQVDELDKAIAVASRDPSWYGIDEVELESRMTWTSSSRSQVVTMKKALEAGKGSSTTSHSSMRQELMRLPSSRQNDTYNQYAARDNDDFIQSESDRQMLLIKKQDEELDDLSESVRRIGGVGLTIHDELTAQDKILEELGSEMDSTTNRLDFVQKKVGMVMKKASAKGQIMMICGLLALFIFLFILVFFT* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0464 243 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
Pvu6g0464 243 SUPERFAMILY SNARE fusion complex 149 213 - -
Pvu6g0464 243 Pfam SNARE domain 188 239 IPR000727 -
Pvu6g0464 243 CDD SNARE_Qc 154 210 - -
Pvu6g0464 243 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Pvu6g0464 243 Gene3D - 2 104 - -
Pvu6g0464 243 Gene3D - 158 222 - -
Pvu6g0464 243 PANTHER SYNTAXIN 1 242 IPR045242 -
Pvu6g0464 243 Coils Coil 189 209 - -
Pvu6g0464 243 PANTHER SYNTAXIN PROTEIN 1 242 - -
Pvu6g0464 243 SMART tSNARE_6 146 213 IPR000727 -
Pvu6g0464 243 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 151 213 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0464 Pvu-Chr6 15778367 15782429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0464 55 243 SNARE and Associated Proteins AT1G28490 68.421 1.34e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0464 K08500 - gmx:100787129 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0464 6 15778367 15782429 Pvu8g2767 8 57856424 57860189 PCT