LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g0459	ATGGTTGAGCTGGAAATCCAAGTCCCCACGCCATTCGACCCATTTGCTGAGGCTAGAGAATCGGATGCCCCCGGAGCGAAGGAGTATGTGCACATTCGGATCCAGCAGAGGAATGGGAAGAAGAGTCTGACCACAGTGCAGGGGCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAGGACCTCAAGAAAGACTTCTGCTGCAACGGCAATGTGGTGCAGGACAAGGAGCTTGGCAAGATAATTCAGCTCCAAGGTGACCAGCGGAAGAACGTCTCACACTTCTTGGTCCAGGCTGGCCTTGTCAGGAAGGACCAGATCAAGATTCATGGTTTTTGA	339	0.5221	MVELEIQVPTPFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQIKIHGF*	113

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g0459	112	CDD	eIF1_SUI1	28	111	IPR005874	GO:0003743
	Pvu6g0459	112	Gene3D	-	1	112	-	-
	Pvu6g0459	112	ProSiteProfiles	Translation initiation factor SUI1 family profile.	30	100	IPR001950	GO:0003743\|GO:0006413
	Pvu6g0459	112	SUPERFAMILY	eIF1-like	4	112	IPR036877	GO:0003743\|GO:0006413
	Pvu6g0459	112	TIGRFAM	SUI1_MOF2: translation initiation factor SUI1	5	112	IPR005874	GO:0003743
	Pvu6g0459	112	Pfam	Translation initiation factor SUI1	27	100	IPR001950	GO:0003743\|GO:0006413
	Pvu6g0459	112	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	1	112	-	-
	Pvu6g0459	112	PANTHER	PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG	1	112	-	-
	Pvu6g0459	112	PIRSF	Transl_init_SUI1_Euk	1	112	IPR005874	GO:0003743

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g0459	Pvu-Chr6	15726594	15728126	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu6g0459	1	112	Eukaryotic Initiation Factors Gene Family	AT5G54940	84.821	3.72e-70	203

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g0459	K03113		-	gmx:100791423	222.631

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu6g0459	6	15726594	15728126	Pvu6g0459	6	15726594	15728126	ECH
	Pvu6g0459	6	15726594	15728126	Pvu8g2766	8	57854157	57855548	PCT