Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0458 ATGCATAGAGGTCGTAGAGGCAACATGCATAGAGGTCGTAGAGGCAACATGCATAGAGGTCCCTCCAACTTTCATGCTCCTAGAGGCAACATTCATAATCTTCCTCCTAGGGCCTTTCCTCAGGAAGAAGTTGCTTCATTCCGTAACCAACACAGTGATATACAATTGGATATTGACGACATGTCATATGAGGAGCTTCTTATATTAAGTGAACAGATTGGCAGTGTAGAGAGGGGTTTGTCTGAAGAAATCATTGCAAGACAAATGCTAACAAAAACCTATCTACTACCTAATAAGGAGGGGTCAGCTTCTGAAGAAGAGGAAATTGATCTTTGCATAATATGTCAGGATGAATATAAAAACAAAGAAGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAGATTGTGTAAGGAGATGGTTACAAGAGAAAAATGTTTGTCCCCTATGCAAATCAAAAGCATTGAGTATTGGATAG 483 0.3975 MHRGRRGNMHRGRRGNMHRGPSNFHAPRGNIHNLPPRAFPQEEVASFRNQHSDIQLDIDDMSYEELLILSEQIGSVERGLSEEIIARQMLTKTYLLPNKEGSASEEEEIDLCIICQDEYKNKEEIGILQCGHEYHADCVRRWLQEKNVCPLCKSKALSIG* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0458 160 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 40 157 IPR045191 GO:0061630
Pvu6g0458 160 MobiDBLite consensus disorder prediction 1 36 - -
Pvu6g0458 160 Pfam Ring finger domain 111 153 IPR001841 -
Pvu6g0458 160 SMART ring_2 112 152 IPR001841 -
Pvu6g0458 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 157 IPR013083 -
Pvu6g0458 160 PANTHER OS04G0185500 PROTEIN 40 157 - -
Pvu6g0458 160 ProSiteProfiles Zinc finger RING-type profile. 112 153 IPR001841 -
Pvu6g0458 160 MobiDBLite consensus disorder prediction 1 18 - -
Pvu6g0458 160 SUPERFAMILY RING/U-box 111 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0458 Pvu-Chr6 15723734 15724425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0458 49 157 C3H Transcription Factor Family AT2G15530 44.954 2.05e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0458 K19041 - pvu:PHAVU_010G0831000 225.713