Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0455 ATGTGCCTGTTCCATCTACTCATTATGTGGCATCAATCTTCACCACTTTTCAACCCAAATCATCTTGCATTTTACTCATCTTCTCACTTTCAGTCTAAGCCCATTTTCTCACCCTTTCTCTCAACTATGACCATCTGCTTTTCTGGATTCAGTCAAGCCACAACAAGGTGTAAGGAACTTCTTTCCATCTGGCTTTTGGCTGGCAGTGACAGTTATGCACTTCATCAGTTCATGAAAGTTCTCAAGAGACTTGTTTTTGCTGAATTTACCTGCATTCTGGCATTAGGAGGGTCCATAATGGGGATAATTGCAGGAGCCATCTGTGGCCAGACAACAGAAGCTGGTTTTCTTGATGGTGCTTGCAAAGGAGCTGTCACAGGGGCAATTGCTGCACTAGAATTGCTAAACAATGCTGCAGTTGCTGAGAATCTATCAAAGATTGCCCTATTGAGGAGTTTGTTAAATGGAAAAGTATTTATGGAATGGATATGTCCAGTTGTTGCACAAGCCTATGAATGTCATATCAGTGCACATGGAACAATTTACAGAGAAGAATCAGATATTTATAATGGCTTTGTCAGGGGAATCACAGTCAAAGGGATGGCTTGGAATATCATCCAAGACCTTCCTGTTCAACAATTCAGTAAAATGTTGAAACTATACAATGAATCATGCTGCTCTATTTGCTTCCAGGATTTTGAGGATGAAGAATTTGTGAGAACACTTCCAAAGTGTGGCCACTTTTTTCACTTGGTGTGCATAGACAAATGGCTAGTTCAACAAGGATCATGCCCCATCTGTAGAATTAATTATGTTCCACATTTATGA 828 0.4034 MCLFHLLIMWHQSSPLFNPNHLAFYSSSHFQSKPIFSPFLSTMTICFSGFSQATTRCKELLSIWLLAGSDSYALHQFMKVLKRLVFAEFTCILALGGSIMGIIAGAICGQTTEAGFLDGACKGAVTGAIAALELLNNAAVAENLSKIALLRSLLNGKVFMEWICPVVAQAYECHISAHGTIYREESDIYNGFVRGITVKGMAWNIIQDLPVQQFSKMLKLYNESCCSICFQDFEDEEFVRTLPKCGHFFHLVCIDKWLVQQGSCPICRINYVPHL* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0455 275 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 49 270 IPR044523 -
Pvu6g0455 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 273 IPR013083 -
Pvu6g0455 275 Pfam Ring finger domain 226 268 IPR001841 -
Pvu6g0455 275 ProSiteProfiles Zinc finger RING-type profile. 226 268 IPR001841 -
Pvu6g0455 275 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 49 270 - -
Pvu6g0455 275 SMART ring_2 226 267 IPR001841 -
Pvu6g0455 275 SUPERFAMILY RING/U-box 205 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0455 Pvu-Chr6 15683968 15686456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0455 80 268 C3H Transcription Factor Family AT5G66070 35.176 5.72e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0455 - K19041 gmx:100799697 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0455 6 15683968 15686456 Pvu6g0455 6 15683968 15686456 ECH
Pvu6g0455 6 15683968 15686456 Pvu8g2755 8 57781619 57783143 PCT