Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0410 ATGTCGCCCAGCTTCGTCTTCGATCCTCCCAGCGACGAAGAAATTGAACACTCCGAACGAGAAGAGGAAGAAGAAGACCAAGAAGAACCAGAAGAAGCGGAGTCAGGATCAGATTCTGACGAAGAAGAAGAAGAAGGGCGGCACAAAGAACCGCGGGTTTCGAAAAAGAAAACGCAGTCTCCATGGGACTTCGCTAAATACACTGAATCAGTGGCCGAGGAGCACGCTCGCAGGAGCACAACCTCGGTGGACGAGAAAATCTCCAAGGCTCTCCGACAACGTTCCACGCCGCTCGTTGCTGAGCTTGACCACAGCTCCGAGTCCGAACTTGATGAACAAGAAGACTATAGACCGGATGAAGAAGACGAAGAAGAGGGTTATGGTGGTGATAGCAAGTCCTTTTTTGCTCCTTCTGATGGAACCTCTTTCCACGCTGATTCTTTCCTGCAGCTTAATTTGTCTCGTCCTTTGCTACGGGCTTGTGAGGCCCTGGGGTATGCTAAACCAACGCCAATTCAGGCAGCATGTATTCCATTGGCATTATCTGGTCGTGATATATGTGGTAGTGCCATTACTGGGTCAGGGAAGACAGCTGCATTTGCACTGCCTACGCTAGAGAGGTTGTTGTTCCGTCCAAAACGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAATTGGCAGTCCAAGTTCACAGCATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTCTCAACAAAGGTGCAAGAGGTTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCTGGACGCATGATTGACCATTTACGCAATGCTATGTCTGTTGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCGTGTGTCCCAAAAAAAGGCAGACTATGCTGTTTTCAGCAACAATGACTGAGGAGGTTGATGAACTTATTAAACTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGATCCATCTACAAAACGGCCAACAACCTTGACTGAGGAAGTTGTTAGATTACGAAGAATGCGTGAAGTAAACCAGGAAGCTGTTCTTCTTGCAATGTGCTCAAAAACTTTTACCTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCAGCACATAGATTAAAGATTATATTTGGATTAGCTGGCTTAAAAGCTGCCGAGCTTCATGGAAATCTTACTCAAGCCCAGCGTCTGGAAGCTTTGGAACAGTTTAGGAAGCAGCAAGTGGAATTTCTGGTTGCAACTGATGTGGCTGCCCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTTCATGTCCACGTGATCTTACTAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGCTGTCACTTTTGTGTCTGACAATGATCGATCACTTTTAAAAGCCATTGCCAAGAGGGCGGGTTCAAAGTTGAAAAGCCGCACTGTTGCTGAGCAGTCTATACTTAAGTGGTCTCATATTATTGACCAAATGGAGGATCAAATTTATGAAGTACTTCAAGAAGAGAGTGAAGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGAACATAAGGAAGAGATCTTTTCCCGTCCCAAAAGAACATGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCAAAAGCAGCTAAGGCGTCCTCCCTAGAAAAGAACAAGAGTTCTGGGAAAGAGGTAATTAGTGCCGAACAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAACGAGAGCGAGAGAAACATTTGCCTAGAAAGAAGCGCAGAAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGATGAGGAGCAGGATGGTAACCAAGTAGAGGCCAAGGGGACAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCAGCAGATTCTGGCAAGATTATGAAGAAGAGTCAAAAGAAATCTAGTAATGTTCCGAGAAAAACTCCTTCAAGGACAGAAGAGATGAGGGATCTATTCCAGACTGAAATGAAGGATAAAAAGCCAAAAAGAAAAGGTGTTGGAGGAGGAAAGAAGTCCAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2262 0.4523 MSPSFVFDPPSDEEIEHSEREEEEEDQEEPEEAESGSDSDEEEEEGRHKEPRVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALRQRSTPLVAELDHSSESELDEQEDYRPDEEDEEEGYGGDSKSFFAPSDGTSFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEVALRTMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRVCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPTTLTEEVVRLRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVEFLVATDVAARGLDIIGVQTVINFSCPRDLTSYVHRVGRTARAGREGYAVTFVSDNDRSLLKAIAKRAGSKLKSRTVAEQSILKWSHIIDQMEDQIYEVLQEESEERVLRKAEMEATKAENMIEHKEEIFSRPKRTWFVTEKEKKLAAKAAKASSLEKNKSSGKEVISAEQAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEDEEQDGNQVEAKGTNKKEKGGMSLVDLAYRRAKAVKAVKKAADSGKIMKKSQKKSSNVPRKTPSRTEEMRDLFQTEMKDKKPKRKGVGGGKKSKSSFKSKSRYKRK* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0410 753 Coils Coil 544 571 - -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 15 41 - -
Pvu6g0410 753 SMART ultradead3 165 366 IPR014001 -
Pvu6g0410 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 351 IPR014001 -
Pvu6g0410 753 Coils Coil 639 659 - -
Pvu6g0410 753 Gene3D - 110 353 IPR027417 -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 638 666 - -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 1 135 - -
Pvu6g0410 753 CDD SF2_C_DEAD 363 495 - -
Pvu6g0410 753 PANTHER BNAA01G17110D PROTEIN 302 733 - -
Pvu6g0410 753 PANTHER BNAA01G17110D PROTEIN 52 277 - -
Pvu6g0410 753 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 297 305 IPR000629 -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 107 127 - -
Pvu6g0410 753 Pfam Helicase conserved C-terminal domain 383 486 IPR001650 -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 593 669 - -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 42 59 - -
Pvu6g0410 753 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 146 174 IPR014014 GO:0003724
Pvu6g0410 753 Pfam DEAD/DEAH box helicase 170 340 IPR011545 GO:0003676|GO:0005524
Pvu6g0410 753 Coils Coil 581 601 - -
Pvu6g0410 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 525 IPR001650 -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 707 730 - -
Pvu6g0410 753 CDD DEADc_DDX27 157 352 - -
Pvu6g0410 753 Gene3D - 362 529 IPR027417 -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 731 753 - -
Pvu6g0410 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 506 IPR027417 -
Pvu6g0410 753 SMART helicmild6 401 486 IPR001650 -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 605 623 - -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 68 91 - -
Pvu6g0410 753 PANTHER RNA HELICASE 52 277 - -
Pvu6g0410 753 PANTHER RNA HELICASE 302 733 - -
Pvu6g0410 753 MobiDBLite consensus disorder prediction 684 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0410 Pvu-Chr6 14865891 14874127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0410 134 503 Eukaryotic Initiation Factors Gene Family AT3G13920 32.976 2.64e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0410 K13181 - gmx:100776684 1098.57