Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu6g0410 | ATGTCGCCCAGCTTCGTCTTCGATCCTCCCAGCGACGAAGAAATTGAACACTCCGAACGAGAAGAGGAAGAAGAAGACCAAGAAGAACCAGAAGAAGCGGAGTCAGGATCAGATTCTGACGAAGAAGAAGAAGAAGGGCGGCACAAAGAACCGCGGGTTTCGAAAAAGAAAACGCAGTCTCCATGGGACTTCGCTAAATACACTGAATCAGTGGCCGAGGAGCACGCTCGCAGGAGCACAACCTCGGTGGACGAGAAAATCTCCAAGGCTCTCCGACAACGTTCCACGCCGCTCGTTGCTGAGCTTGACCACAGCTCCGAGTCCGAACTTGATGAACAAGAAGACTATAGACCGGATGAAGAAGACGAAGAAGAGGGTTATGGTGGTGATAGCAAGTCCTTTTTTGCTCCTTCTGATGGAACCTCTTTCCACGCTGATTCTTTCCTGCAGCTTAATTTGTCTCGTCCTTTGCTACGGGCTTGTGAGGCCCTGGGGTATGCTAAACCAACGCCAATTCAGGCAGCATGTATTCCATTGGCATTATCTGGTCGTGATATATGTGGTAGTGCCATTACTGGGTCAGGGAAGACAGCTGCATTTGCACTGCCTACGCTAGAGAGGTTGTTGTTCCGTCCAAAACGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAATTGGCAGTCCAAGTTCACAGCATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTCTCAACAAAGGTGCAAGAGGTTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCTGGACGCATGATTGACCATTTACGCAATGCTATGTCTGTTGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCGTGTGTCCCAAAAAAAGGCAGACTATGCTGTTTTCAGCAACAATGACTGAGGAGGTTGATGAACTTATTAAACTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGATCCATCTACAAAACGGCCAACAACCTTGACTGAGGAAGTTGTTAGATTACGAAGAATGCGTGAAGTAAACCAGGAAGCTGTTCTTCTTGCAATGTGCTCAAAAACTTTTACCTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCAGCACATAGATTAAAGATTATATTTGGATTAGCTGGCTTAAAAGCTGCCGAGCTTCATGGAAATCTTACTCAAGCCCAGCGTCTGGAAGCTTTGGAACAGTTTAGGAAGCAGCAAGTGGAATTTCTGGTTGCAACTGATGTGGCTGCCCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTTCATGTCCACGTGATCTTACTAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGCTGTCACTTTTGTGTCTGACAATGATCGATCACTTTTAAAAGCCATTGCCAAGAGGGCGGGTTCAAAGTTGAAAAGCCGCACTGTTGCTGAGCAGTCTATACTTAAGTGGTCTCATATTATTGACCAAATGGAGGATCAAATTTATGAAGTACTTCAAGAAGAGAGTGAAGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGAACATAAGGAAGAGATCTTTTCCCGTCCCAAAAGAACATGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCAAAAGCAGCTAAGGCGTCCTCCCTAGAAAAGAACAAGAGTTCTGGGAAAGAGGTAATTAGTGCCGAACAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAACGAGAGCGAGAGAAACATTTGCCTAGAAAGAAGCGCAGAAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGATGAGGAGCAGGATGGTAACCAAGTAGAGGCCAAGGGGACAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCAGCAGATTCTGGCAAGATTATGAAGAAGAGTCAAAAGAAATCTAGTAATGTTCCGAGAAAAACTCCTTCAAGGACAGAAGAGATGAGGGATCTATTCCAGACTGAAATGAAGGATAAAAAGCCAAAAAGAAAAGGTGTTGGAGGAGGAAAGAAGTCCAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG | 2262 | 0.4523 | MSPSFVFDPPSDEEIEHSEREEEEEDQEEPEEAESGSDSDEEEEEGRHKEPRVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALRQRSTPLVAELDHSSESELDEQEDYRPDEEDEEEGYGGDSKSFFAPSDGTSFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEVALRTMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRVCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPTTLTEEVVRLRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVEFLVATDVAARGLDIIGVQTVINFSCPRDLTSYVHRVGRTARAGREGYAVTFVSDNDRSLLKAIAKRAGSKLKSRTVAEQSILKWSHIIDQMEDQIYEVLQEESEERVLRKAEMEATKAENMIEHKEEIFSRPKRTWFVTEKEKKLAAKAAKASSLEKNKSSGKEVISAEQAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEDEEQDGNQVEAKGTNKKEKGGMSLVDLAYRRAKAVKAVKKAADSGKIMKKSQKKSSNVPRKTPSRTEEMRDLFQTEMKDKKPKRKGVGGGKKSKSSFKSKSRYKRK* | 754 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu6g0410 | 753 | Coils | Coil | 544 | 571 | - | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 15 | 41 | - | - | |
Pvu6g0410 | 753 | SMART | ultradead3 | 165 | 366 | IPR014001 | - | |
Pvu6g0410 | 753 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 177 | 351 | IPR014001 | - | |
Pvu6g0410 | 753 | Coils | Coil | 639 | 659 | - | - | |
Pvu6g0410 | 753 | Gene3D | - | 110 | 353 | IPR027417 | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 638 | 666 | - | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 1 | 135 | - | - | |
Pvu6g0410 | 753 | CDD | SF2_C_DEAD | 363 | 495 | - | - | |
Pvu6g0410 | 753 | PANTHER | BNAA01G17110D PROTEIN | 302 | 733 | - | - | |
Pvu6g0410 | 753 | PANTHER | BNAA01G17110D PROTEIN | 52 | 277 | - | - | |
Pvu6g0410 | 753 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 297 | 305 | IPR000629 | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 107 | 127 | - | - | |
Pvu6g0410 | 753 | Pfam | Helicase conserved C-terminal domain | 383 | 486 | IPR001650 | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 593 | 669 | - | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 42 | 59 | - | - | |
Pvu6g0410 | 753 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 146 | 174 | IPR014014 | GO:0003724 | |
Pvu6g0410 | 753 | Pfam | DEAD/DEAH box helicase | 170 | 340 | IPR011545 | GO:0003676|GO:0005524 | |
Pvu6g0410 | 753 | Coils | Coil | 581 | 601 | - | - | |
Pvu6g0410 | 753 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 362 | 525 | IPR001650 | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 707 | 730 | - | - | |
Pvu6g0410 | 753 | CDD | DEADc_DDX27 | 157 | 352 | - | - | |
Pvu6g0410 | 753 | Gene3D | - | 362 | 529 | IPR027417 | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 731 | 753 | - | - | |
Pvu6g0410 | 753 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 218 | 506 | IPR027417 | - | |
Pvu6g0410 | 753 | SMART | helicmild6 | 401 | 486 | IPR001650 | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 605 | 623 | - | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 68 | 91 | - | - | |
Pvu6g0410 | 753 | PANTHER | RNA HELICASE | 52 | 277 | - | - | |
Pvu6g0410 | 753 | PANTHER | RNA HELICASE | 302 | 733 | - | - | |
Pvu6g0410 | 753 | MobiDBLite | consensus disorder prediction | 684 | 753 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu6g0410 | Pvu-Chr6 | 14865891 | 14874127 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu6g0410 | 134 | 503 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 32.976 | 2.64e-50 | 180 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu6g0410 | K13181 | - | gmx:100776684 | 1098.57 |