Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0376 ATGAACGAGATGAGTGAACAAAGGTTTCAATCTGAAAGCACCGATCCTGGGAGGACAAACATTTCTGAACCTGAACCTAATATGTTAAGAGTAATAGTGGTGGAAGGAAATACAATGGATTCCCATTACTTACTAGACGCTTATTATGACAATAGGATGGTGTATGGAATGACACAACTCAATGGAGTTCAGCATCAACCTAGTCTTGATATTGGTGTTTCACATCATATTAGTGTTACAGATTCATCTAATGCAATTGGCATCCCCTTCATTCATAGTTTTGGCTCTTGGGGATCTTTGATTCAAGCTCCAACTCCCAATGCTAATGTAAGTTCATTAGAGAATTCAAGAATGAATCTCCAAAGATATCATGATACAACTGGAAGTAGAAGGAGCCACAGATTTGCCCATCAGCACTATCATCATCATGCACAGCCTGTGCAAGTGCAAGAGATCAGAGGTCACTCCAACCATCATCATGCACACTACCATCATCATGCACAGCCTATGCAAGTGCAAGAGAACAGAGGTCACTCCAACTTTCGTGCTCGTAGAGGCAACATGCATAGAGGTCACTCCAACTTTCATGCTCGTAGAGGCAATATGCATAATCATCCTCCTAGAGGTCACTCCAACTTTCATGCTCCTAGAGGCAACATGCATAATCTTCCTCCTAGGGCCTTTCTTCAGGAAGTTGTTTCATTCCGTGACCATCATAGTGATATACAATTGGACATTGACGACATGTCATATGAGGACCTTCTTATATTAGGTGAACGGATTGGGAACGTCGAGAGGGGTTTGTCCGAAGAAATTATTGCAAGACAAATGGATGAATATAAGAACAAAGAGGAGATTGGAATTCTTCAATGTGGACATGAATACCATGCAGATTGTGTAAGGAGATGGTTACAAGAGAAAAATGTTTGTCCCCTCTGCAAATCAAAAGCATTGGCTATTGGATAG 966 0.412 MNEMSEQRFQSESTDPGRTNISEPEPNMLRVIVVEGNTMDSHYLLDAYYDNRMVYGMTQLNGVQHQPSLDIGVSHHISVTDSSNAIGIPFIHSFGSWGSLIQAPTPNANVSSLENSRMNLQRYHDTTGSRRSHRFAHQHYHHHAQPVQVQEIRGHSNHHHAHYHHHAQPMQVQENRGHSNFRARRGNMHRGHSNFHARRGNMHNHPPRGHSNFHAPRGNMHNLPPRAFLQEVVSFRDHHSDIQLDIDDMSYEDLLILGERIGNVERGLSEEIIARQMDEYKNKEEIGILQCGHEYHADCVRRWLQEKNVCPLCKSKALAIG* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0376 321 MobiDBLite consensus disorder prediction 1 24 - -
Pvu6g0376 321 Pfam RING-H2 zinc finger domain 285 314 IPR024766 GO:0008270
Pvu6g0376 321 MobiDBLite consensus disorder prediction 190 215 - -
Pvu6g0376 321 MobiDBLite consensus disorder prediction 1 21 - -
Pvu6g0376 321 ProSiteProfiles Zinc finger RING-type profile. 288 314 IPR001841 -
Pvu6g0376 321 SUPERFAMILY RING/U-box 277 317 - -
Pvu6g0376 321 MobiDBLite consensus disorder prediction 190 205 - -
Pvu6g0376 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 318 IPR013083 -
Pvu6g0376 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 43 318 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0376 Pvu-Chr6 14326527 14328454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0376 230 318 C3H Transcription Factor Family AT2G15530 40.000 5.95e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0376 - K19041 pvu:PHAVU_006G035700g 643.654