Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0362 ATGCTTCAAACCATGGAGCTTCCAAATCAAGCTCAAGAAGGATCTTCTCAAAAGAAGATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACAAATAGGCAAGTCACCTTCTGCAAACGCCGCAACGGTTTGCTGAAGAAAGCTTATGAACTGTCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAAGCCGTGGCCGTTTGTATGAGTATGCCAACAACAGGTTATACCAACACACAAACCCTTCTTAA 267 0.4419 MLQTMELPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNRLYQHTNPS* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0362 88 MobiDBLite consensus disorder prediction 1 24 - -
Pvu6g0362 88 PANTHER MADS BOX PROTEIN 15 80 - -
Pvu6g0362 88 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Pvu6g0362 88 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Pvu6g0362 88 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Pvu6g0362 88 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Pvu6g0362 88 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 15 80 - -
Pvu6g0362 88 CDD MADS_MEF2_like 21 79 IPR033896 GO:0000977|GO:0045944
Pvu6g0362 88 SUPERFAMILY SRF-like 20 83 IPR036879 GO:0003677|GO:0046983
Pvu6g0362 88 MobiDBLite consensus disorder prediction 1 17 - -
Pvu6g0362 88 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Pvu6g0362 88 Gene3D - 32 87 IPR036879 GO:0003677|GO:0046983
Pvu6g0362 88 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Pvu6g0362 88 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0362 Pvu-Chr6 13962324 13963173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0362 4 81 MADS-box Gene Family AT3G58780 79.487 1.36e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu6g0362 SRF-TF 2.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0362 K09264 - pvu:PHAVU_006G034400g 177.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0362 6 13962324 13963173 Pvu8g1975 8 49611850 49614871 PCT