Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0360 ATGGACGGTGCGGCACAATCCGCCGCTGCCGCCGCCGCCGCCGCGGGAGGACCGGCGCCGTTTCTTCTGAAGACATATGACATGGTGGACGATTCCTCCACTAGCGACATCGTTTCGTGGAGCTCATCCAACACCAGCTTCGTCGTGTGGAATCCGCCGGAGTTCGCTCGCCTTCTTCTACCGACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATACCTACGGTTTCCGAAAAATACATCCAGAGCGATGGGAATTTGCTAATGAGGAGTTTGTGAAAGGTCAGAAGCATCTTCTTAAGAATATACATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTACTATTGTAGATCCAGAAAGGGCAGCATTTGAGGAAGAAATCGAGAAACTTTCCAATGAGAAATCTTCTCTTGAGTCCAATATTCATAATTTCAGACAACATCAGTCAACAGCAAAGCTTCAACTAGAAGATTTTCTGCAGCGGTTAGATGGTACTGAAAAGAGGCAGAAACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTAGTTTTGTTGAACATCTTTCCCGCAAAATTGAGTCCATGGATTTATCAGCATATAATAAGAAGAGGCGATTGCCTCAAGTTGATAATGTTCAACCGATTGCAGAAAGTAGCTTGGTGGACAGTCAAAGCAATTTTAGAATGGAATTTGGAAATGTCTTCCATCAGGATTTCTCGAATAAACTCAGACTGGAATTGTCACCAGCTGTGTCAGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGAGGAAAGTCCACAGAAAAAACTGTCTGAAGTGGAACCAAAAGGAGTTCAGACAAGAACAGCTCTTACATTTGCACCTGAAACATTAGAACTTGCGGATACCGGGACTTCTTTTACTTTTAAGATGGATTCATGTTTATCGCTAAAAGCAACAGCTGCTGAGAGCTCAAAACAGATCTCTTTGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAATTAAACTTAACTCTGGCATCTTGTTCATTGCAAGCAAATAGAAATTCATATTTAGCCAGATCACCCCAAATAGACTGTCAAGAAATTGGCAAATTGGCAGAATCCAGATTTTTTTCCAGTGGTAAAGAATCTGAAAGTGGTGTTTCCTCAAACCAAAATGCAGCTGCTGAGGCTACCAATTTAGCTTCACCACAGGAGGCTCCAAATAATAATAACCCAGTTAATCCAGCTCCTCCAGAAAAGGTGAATGATGTTTTCTGGGAACAGTTTCTTACAGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATATCCAACTACCGAGCCAACCCATATGATGAACAAGACGAAGGACGGTCTGCTCATGGAATATCTAGAAACATTAAAAACATGGACCAACTCAGACTTTGA 1464 0.4303 MDGAAQSAAAAAAAAGGPAPFLLKTYDMVDDSSTSDIVSWSSSNTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANEEFVKGQKHLLKNIHRRKPIHSHSHPPGTIVDPERAAFEEEIEKLSNEKSSLESNIHNFRQHQSTAKLQLEDFLQRLDGTEKRQKQLLNFFEKALQNPSFVEHLSRKIESMDLSAYNKKRRLPQVDNVQPIAESSLVDSQSNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDEESPQKKLSEVEPKGVQTRTALTFAPETLELADTGTSFTFKMDSCLSLKATAAESSKQISLEPSSEEGDSHISCQLNLTLASCSLQANRNSYLARSPQIDCQEIGKLAESRFFSSGKESESGVSSNQNAAAEATNLASPQEAPNNNNPVNPAPPEKVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSAHGISRNIKNMDQLRL* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0360 487 MobiDBLite consensus disorder prediction 460 487 - -
Pvu6g0360 487 Gene3D - 15 111 IPR036388 -
Pvu6g0360 487 MobiDBLite consensus disorder prediction 275 289 - -
Pvu6g0360 487 MobiDBLite consensus disorder prediction 265 290 - -
Pvu6g0360 487 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0360 487 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0360 487 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0360 487 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Pvu6g0360 487 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 15 483 - -
Pvu6g0360 487 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0360 487 MobiDBLite consensus disorder prediction 392 430 - -
Pvu6g0360 487 Coils Coil 128 155 - -
Pvu6g0360 487 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0360 487 MobiDBLite consensus disorder prediction 392 421 - -
Pvu6g0360 487 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0360 487 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 483 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0360 Pvu-Chr6 13922202 13927066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0360 1 487 HSF AT4G13980 52.727 5.66e-164 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu6g0360 HSF_DNA-bind 1.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0360 K09419 - gmx:100786408 799.275