Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0353 ATGGACAAAAATTATGGGGATTCTTCACCAGCTCATGTTGCCGCAGGTTCATCTGAGATTTCCTCACTGAATGCTCGGAAAAAAGTGGCAAGCAGTGCATGGGGAATACCACGAGCAACTGATGTGTTCCATGATTCAAGTGATATTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAGTTAGATTTGACTGATTCTGAAAATTATGCCCAACCAGTTGATGATAACTTGCTAACATTAGAGAAAGTTCATAAAGAAGAAGAGGGACATGATCCTTTTGATGATTTTGAAACCAGTGGAATCGGGAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAACCAACTGGAGGATTTAGATGAAAATGATCTGTTTGTCAATGGAGGAGAATTTGAGATGGATTGTGAACCCCAAGAGAGCCTTAATATTGGCATGACCAAGATAACCATATCAGATGGAGTTGCTTCAAATGGTATTGGTCACTATGCTATCCCAAATGGTGTTGGTACTGTAGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACACTATTTGTTCGAAACATCAACAGTAACGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGCTATCAGAACTTTGTACACAGCATGCAAACATAGAGGCTTTGTGATGATATCATACTACGACATTCGAGCTGCTCGTACGGCCATGCGTACTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCGAAGGATAACCCTTCAGAAAAAGATATAAATCAAGGAACCCTTGTAGTGTTCAATTTAGACCCATCCGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCGCATAAGAGGCACCATAAATTTATTGAATTTTATGACGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGGGACATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAGGAACTGGAACAAGATGAAGCCCGAACTTTTAGGCATCAAGTAGGTTCACCCTTGGCCAATTCTCCTCCTGGTACCTGGGCACAATTTGGTAGTCCGGTTGAACATAATTCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGTCCAATTAATACCAGCCATTTGTCTGGATTGGCTGCAATTCTTTCGCCACATGCAACAACCTCTCCCAAGATTGCGCCAATTGGCAAGGACCCTGGAAGAATTACAAATCAGCTGTTTTCAAACTCCGGATCAACACAAGGAGCAGCTTTTCAGCAGTCTATCTCCTTTCCTGAGAAAAATGTAAATGCAAGTCCTAGGCCTATATCTAATTTTGGTGAATCAAATTCAGGTGCATCAAGTATTGGAACACTCTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCTGAGCATTCAAACACTTCATGGTCTTCATCTTCTGTGGGGCTTCCATTTACGTCTGGAGTCCAAAGGCAGGGTTTTCCTTATACTAGTCATCGAAGTCCTTTTCTTGGCTCCCATTCTCATCATCATGTTGGATCTGCTCCATCTGGCCTTCCACTTGATAGGCATTTTAGCTACTTCCCTGAATCACCTGAAGCTTCTCTCATGAGCCCTGTTGGGTTTGGGAATTTAAATCAGAGTGAAGGGAATTTTATGATGAACATGGGTGGTCATGCATCCATAGGAGCTGGTCTGTCAGGAAATACCGCTGAAATTAGTTCTCCTAATTTCAGAATGATGTCACTTCCTAGGCCTGGTTCCTTGTTCCTTGGAAATAGTTCGTATACTGGACAAGGAGCAGCTAACATTGATGGATTAGCTGGACGTGGACAAAGTAGACGACCTGACAATGCTGGGAACCAAATGGAAAGTAAGAAATTGTACCAGCTTGATCTTGACAAAATCGTCAGTGGTGAAGATGCAAGAACTACTTTAATGATTAAAAACATTCCTAACAAGTATACCTCAAAGATGTTGCTTGCTGCAATTGATGAGAATCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTGAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAGAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAGGACAAACGATGCCGGCCAATTCTTTTTCATTCAGAGGGCCAGGATACTAGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCAGATGGATCCTATTCAGGTGACTTGTTGGAGAGCCCAAAGGGCAATTTGGATCTGAAGTTAGAGAAAGATTAA 2562 0.4215 MDKNYGDSSPAHVAAGSSEISSLNARKKVASSAWGIPRATDVFHDSSDISLFSSSLPVLPHEKLDLTDSENYAQPVDDNLLTLEKVHKEEEGHDPFDDFETSGIGNMLPDDEEELLAGIMDDFDLSKLPNQLEDLDENDLFVNGGEFEMDCEPQESLNIGMTKITISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGAIRTLYTACKHRGFVMISYYDIRAARTAMRTLQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRRDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPLANSPPGTWAQFGSPVEHNSLGSFSKSPGLGHASPINTSHLSGLAAILSPHATTSPKIAPIGKDPGRITNQLFSNSGSTQGAAFQQSISFPEKNVNASPRPISNFGESNSGASSIGTLSGPQFLWGSPTPYSEHSNTSWSSSSVGLPFTSGVQRQGFPYTSHRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVGFGNLNQSEGNFMMNMGGHASIGAGLSGNTAEISSPNFRMMSLPRPGSLFLGNSSYTGQGAANIDGLAGRGQSRRPDNAGNQMESKKLYQLDLDKIVSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKALNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLDLKLEKD* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0353 853 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Pvu6g0353 853 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Pvu6g0353 853 PANTHER RNA RECOGNITION MOTIF-CONTAINING 9 844 - -
Pvu6g0353 853 Pfam RNA recognition motif 2 693 789 IPR007201 -
Pvu6g0353 853 CDD RRM1_MEI2_like 198 274 IPR034453 -
Pvu6g0353 853 Gene3D - 188 282 IPR012677 -
Pvu6g0353 853 MobiDBLite consensus disorder prediction 480 500 - -
Pvu6g0353 853 Gene3D - 283 381 IPR012677 -
Pvu6g0353 853 MobiDBLite consensus disorder prediction 1 23 - -
Pvu6g0353 853 SUPERFAMILY RNA-binding domain, RBD 695 780 IPR035979 GO:0003676
Pvu6g0353 853 MobiDBLite consensus disorder prediction 443 465 - -
Pvu6g0353 853 PANTHER PROTEIN MEI2-LIKE 2 9 844 - -
Pvu6g0353 853 CDD RRM3_MEI2_like 696 781 IPR034454 -
Pvu6g0353 853 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Pvu6g0353 853 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Pvu6g0353 853 CDD RRM2_MEI2_like 283 353 - -
Pvu6g0353 853 SMART rrm1_1 200 268 IPR000504 GO:0003723
Pvu6g0353 853 SMART rrm1_1 695 771 IPR000504 GO:0003723
Pvu6g0353 853 SMART rrm1_1 285 353 IPR000504 GO:0003723
Pvu6g0353 853 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0353 Pvu-Chr6 13692581 13703479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0353 194 370 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 3.68e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0353 - - gmx:100812324 1528.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0353 6 13692581 13703479 Pvu6g0353 6 13692581 13703479 ECH