Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0344 ATGGTGCCTCGTATTCTCATTACTACACTATCTGCGTCCTTCACACACCACACAACCACCCAATTCCAATTAGGTTCTCTGCTGCTACACAAACACAATGCTTTTCTTTTTATGTTCAAAACATTCACTTCTGATCCGAACAGTCTCAAAGGTGTCACCTTTACCGTGTCTTACCTCATCAACTCATTTGGGTTGTCCCTGGAATTGGCCAGGGAACTCTCCAAGAGAGTGAAATTGAAAACCCCAGATGGTCCAAATGCTGTTATTGACACTCTCAAGAACTATGGATTCTCCAAAGCTCTGGTTGCAAAACTCGTCGAGAAGAATCCCAGGTTGCTTGTTGCAAAGGCAGAGACGACCCTTTTGCCCAAACTCAAGTTCTTCCACTCTATCGGGGTTTCCAACACTGACATGCATAAGATCATGCTCGAAAGCCCCCGTATCTTGGAGAGGAGTCTGGGAAAAATCCTTGTGCCACGATACGAGATTATCAGGAGTATAGTTGGTGATGATCGGAAAGTTGTTAAAGTTTTGACAAGAGCCCCATTTAGCTTCACCGTGTCTGACCTTAGGAAATGCTTGGTTCCAAACATTGAGGTTTTGAGGCAGTCTGGTGTGCCTCAGGGTTCAATTTCTCTGCTGGTGGTCAATTTCCCCCGTGCAACAATGTGGAAGCATTCCAGATTTGTGGAAGTTGTCGAGAGAATTAAGAAATTTGGATTTGACCCTAAGAGAACAAGTTTTGTCATGGCTATCCAAGTGCTTATAACTATGCATAAAGGGGCATGGGAATCGAGATTTGAGATTTATGAGAGGTGGGGCTGGAACAGGGTAATATTTCTTCAAGCGTTTTTGAAGTATCCCAATTTTGTGAAGTTGTCCGACGAGACAGTTACAGAGAAAATGAATTTCCTAGTTAATGATATGGGTTTGTCCTCATTAGAAATTGCCGCATTTCCTCCTATTCTAGCCTACAACTTGGAGAAGAGGATTATCCCTAGATTCTCAGTAATTAAAATCTTGAAATCAAAAGGTTTGCTTAGGAGTAGTTTGAGTTTTAGTTACTATATATGCATGACCGACAATTCCTTTTTGAAGAAATTTGTCATTAGTTTCCAGAAAGATTTGCCTCTCTTACCAGATGTCTATAAAGGATTGATTCATCATGATGATGTAATGTAG 1182 0.4146 MVPRILITTLSASFTHHTTTQFQLGSLLLHKHNAFLFMFKTFTSDPNSLKGVTFTVSYLINSFGLSLELARELSKRVKLKTPDGPNAVIDTLKNYGFSKALVAKLVEKNPRLLVAKAETTLLPKLKFFHSIGVSNTDMHKIMLESPRILERSLGKILVPRYEIIRSIVGDDRKVVKVLTRAPFSFTVSDLRKCLVPNIEVLRQSGVPQGSISLLVVNFPRATMWKHSRFVEVVERIKKFGFDPKRTSFVMAIQVLITMHKGAWESRFEIYERWGWNRVIFLQAFLKYPNFVKLSDETVTEKMNFLVNDMGLSSLEIAAFPPILAYNLEKRIIPRFSVIKILKSKGLLRSSLSFSYYICMTDNSFLKKFVISFQKDLPLLPDVYKGLIHHDDVM* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0344 393 PANTHER CGI-12 PROTEIN-RELATED 31 386 IPR003690 GO:0003690|GO:0006355
Pvu6g0344 393 Gene3D Transcription termination factor 3, mitochondrial 170 376 IPR038538 -
Pvu6g0344 393 SMART mt_12 313 347 IPR003690 GO:0003690|GO:0006355
Pvu6g0344 393 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Pvu6g0344 393 SMART mt_12 175 207 IPR003690 GO:0003690|GO:0006355
Pvu6g0344 393 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Pvu6g0344 393 SMART mt_12 281 312 IPR003690 GO:0003690|GO:0006355
Pvu6g0344 393 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 31 386 - -
Pvu6g0344 393 Pfam mTERF 257 364 IPR003690 GO:0003690|GO:0006355
Pvu6g0344 393 Pfam mTERF 89 244 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0344 Pvu-Chr6 13459073 13460254 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu6g0344 mTERF 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0344 K15032 - gmx:100813396 509.22