LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g0342	TTGCAACGTTCAAAAGCATACATTTGTGGAACATTGAAATCTGAGGAACTCGCCAAGAGGGTGAATCTGAAAACCCCAGATGGTCCAAATGCTGTTCTTGATACTCTCAAGGACTATGGATTCTCCAAAACTCAGGTTGCAAAACTCGTCGAGAAAAATCCCAGGTTGCTTGCTGCAAAGCTAGAGACGACCCTCTTGCCCAAACTCAAGTTCTTCCACTCTATTGGGGCTTCCAACACTGTCATCCATAAGATCGCGCTTGAAAACCCCTTAATCTTGCTCAGGAGTCTGGAAAACTGCATTGTGCCACGGTACCAGATTATAAGGCGTATAGTTCGTGATGATGGGGAAGTTGTTAGAGTTTTGAGAAATGCCCCACTTGGTTTCACATATTGTGACCTATGGAATGACTTGGTTCCCAACATCGAAATTCTGAGGCAGTCTGGTGTGCCTCAGGGTTCCATCTCTCTGCTGATGGTCAACTTCCCCTCTGCAGCAATGGGGAAGCATTCCAGATTTGTGGAAGTTTTCGAGAGAATTAAGAAAATTGGGTTTGATCATAAGAAAACAAATTTTGTCATGGCTATCCAAGTGCTTTTAACGATGCGCGAAGGAGCATGGGAATCGAAATTTAAGATTTATGAGAGGTGGGGCTGGAACTGGGAAATGGCTCTTCAAGCGTTTGTGAAGTTTCCCAATTTTATGAAGTTATCAGAGGAAACAGTTACGAAAAAAATGACTTTCCTAGTGAAGGATATGGGTTTGCCATCATTAGATATTGCTGCATATCCTCCTATTCTAGCCTACAACTTGGAGAACAGGATTATCCCTAGACTCACAGTAATTAAAATCTTGAAATCAAAAGGTTTACTTAAGAGTAGTTTGAGTTTTGGTTCCTATATGGGCATGACCGAGGAAATATTTTTGAAGAAATTTGTCATTGTCTTTGAAGGTTTATGCTGGCTATTTTTCTAA	975	0.4144	LQRSKAYICGTLKSEELAKRVNLKTPDGPNAVLDTLKDYGFSKTQVAKLVEKNPRLLAAKLETTLLPKLKFFHSIGASNTVIHKIALENPLILLRSLENCIVPRYQIIRRIVRDDGEVVRVLRNAPLGFTYCDLWNDLVPNIEILRQSGVPQGSISLLMVNFPSAAMGKHSRFVEVFERIKKIGFDHKKTNFVMAIQVLLTMREGAWESKFKIYERWGWNWEMALQAFVKFPNFMKLSEETVTKKMTFLVKDMGLPSLDIAAYPPILAYNLENRIIPRLTVIKILKSKGLLKSSLSFGSYMGMTEEIFLKKFVIVFEGLCWLFF*	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g0342	324	PANTHER	CGI-12 PROTEIN-RELATED	17	317	IPR003690	GO:0003690\|GO:0006355
	Pvu6g0342	324	Pfam	mTERF	33	245	IPR003690	GO:0003690\|GO:0006355
	Pvu6g0342	324	Pfam	mTERF	217	308	IPR003690	GO:0003690\|GO:0006355
	Pvu6g0342	324	Gene3D	Transcription termination factor 3, mitochondrial	114	317	IPR038538	-
	Pvu6g0342	324	SMART	mt_12	83	114	IPR003690	GO:0003690\|GO:0006355
	Pvu6g0342	324	SMART	mt_12	190	220	IPR003690	GO:0003690\|GO:0006355
	Pvu6g0342	324	SMART	mt_12	225	256	IPR003690	GO:0003690\|GO:0006355
	Pvu6g0342	324	SMART	mt_12	47	78	IPR003690	GO:0003690\|GO:0006355
	Pvu6g0342	324	SMART	mt_12	257	291	IPR003690	GO:0003690\|GO:0006355
	Pvu6g0342	324	PANTHER	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	17	317	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g0342	Pvu-Chr6	13451558	13452823	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Pvu6g0342		mTERF	1.2e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g0342	K15032		-	gmx:100813396	399.823