Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0341 ATGTCAGAAAACAATTCTTTGCATGTGGAATTATCGAAGAAGACTTCGTTTTTGGGATTGAAATTATGGGTTTTGATTGGGATTGGTGTTGGTGCTTTTATAGTTCTGATTCTTTGTGCATTATCTGTATGGGTGATGTTCCGGAGAAAGTCTAGGAGATCTCTGGACAAGTTCTCTTTGTCACAAATACCGCATGTCTCAAAAGACATCAGAGTTGACAAGGTTGGGGTGCAGACTTCTTATGATCAAGCAGAAAGTGTAGCTATTCCTGTTCATGACAAAGCAAGTGAGAACAATTCTGACAAGTTGTTAGTTCATTTGCGCAAGAGCAAATCTGGCGATGCTGATAATATCAGTCAGTGCAGCTCAGTTTATCATCATGAGAGAGGATTTAGTTCAATGTCAGGGGAAGAAGGAAGCTCCGGGACTGTTAAAAAGCAGTCTGCATTGGCATTTGGAGGAGTAGTAACTGCTTCTCCTCTAGTTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGTCACTGGTTTACGCTTAGAGATCTGGAACTTGCAACCAATCGCTTCTCTCCAGAGAATGTGATTGGTGAGGGTGGATATGGGGTTGTTTACAGGGGAAGATTGATCAATGGATCTGAGGTGGCGGTTAAGAAAATTCTTAACAACTTGGGACAAGCAGAGAAAGAGTTCAGTGTGGAAGTGGAGGCTATTGGCCATGTTAGACATAAAAATCTTGTGCGCTTACTTGGTTATTGCATAGAAGGTGTTCACAGGTTATTGGTGTATGAATATGTGAACAATGGTAATTTGGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCTCGGATGAAAGTTATAACGGGCACAGCCAAAGCGCTGGCTTATTTACATGAAGCTATAGAACCGAAAGTTGTTCACCGGGATATCAAGTCTAGCAACATATTGATTGATACTGAGTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTCTGGACTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACGTTTGGTTACGTGGCACCAGAATATGCGAATACAGGTTTGTTAAATGAGAGGAGTGACATTTACAGTTTTGGTGTTCTCCTGCTAGAAGTAGTTACTGGAAGGGATCCTGTGGACTACTCACGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACTAGAAGGGCTGATGAAGTTGTGGATTCAAGGCTTGAAGTGAAACCATCAACACGGGCTTTAAAGCGTTCTCTTCTGGTTGCACTTAGGTGTGTTGATCCTGAAGCAGAAAAGAGGCCTAAAATGAGTCAGGTTGTGAGAATGCTTGAAGCTGATGAATATTCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACTGCCAGCATGGAAATTGAGTCCCTGAAGGATATTTCTGGACCATCTGATGCTGAAAATATGAAGGGTTCTGAAGGTCATGCACCAGAAACAACTCAAGGGTAG 1533 0.4286 MSENNSLHVELSKKTSFLGLKLWVLIGIGVGAFIVLILCALSVWVMFRRKSRRSLDKFSLSQIPHVSKDIRVDKVGVQTSYDQAESVAIPVHDKASENNSDKLLVHLRKSKSGDADNISQCSSVYHHERGFSSMSGEEGSSGTVKKQSALAFGGVVTASPLVGLPEISHLGWGHWFTLRDLELATNRFSPENVIGEGGYGVVYRGRLINGSEVAVKKILNNLGQAEKEFSVEVEAIGHVRHKNLVRLLGYCIEGVHRLLVYEYVNNGNLEQWLHGAMSQQGTLTWEARMKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDTEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEVVTGRDPVDYSRPANEVNLVEWLKMMVGTRRADEVVDSRLEVKPSTRALKRSLLVALRCVDPEAEKRPKMSQVVRMLEADEYSFREDRRNRKSRTASMEIESLKDISGPSDAENMKGSEGHAPETTQG* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0341 510 ProSiteProfiles Protein kinase domain profile. 188 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0341 510 PANTHER OS01G0323000 PROTEIN 2 507 - -
Pvu6g0341 510 Gene3D Transferase(Phosphotransferase) domain 1 264 478 - -
Pvu6g0341 510 PANTHER RECEPTOR-LIKE KINASE PLANT 2 507 - -
Pvu6g0341 510 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Pvu6g0341 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Pvu6g0341 510 MobiDBLite consensus disorder prediction 467 510 - -
Pvu6g0341 510 Pfam Protein kinase domain 191 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0341 510 SUPERFAMILY Protein kinase-like (PK-like) 172 460 IPR011009 -
Pvu6g0341 510 MobiDBLite consensus disorder prediction 467 481 - -
Pvu6g0341 510 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Pvu6g0341 510 CDD STKc_IRAK 194 460 - -
Pvu6g0341 510 SMART serkin_6 188 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0341 Pvu-Chr6 13444265 13448996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0341 19 462 Trihelix Transcription Factor Family AT1G70460 40.444 1.57e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Pvu6g0341 Pkinase 9.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0341 - - gmx:100813931 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0341 6 13444265 13448996 Pvu8g1999 8 49944909 49949358 PCT
Pvu8g2726 8 57585407 57590331 Pvu6g0341 6 13444265 13448996 PCT